SMTL ID : 3ohl.2 (1 other biounit)

catalytic domain of stromelysin-1 in complex with N-Hydroxy-2-(4-methoxy-N-(pyridine-3-ylmethyl)phenylsulfonamido)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.23, D.25, D.100, E.102, W.104 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.25, A:D.25, A:D.100, A:D.100, A:E.102 CA.2: 4 residues within 4Å: Chain A: D.59, G.91, N.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:N.93, A:D.95, H2O.1, H2O.1 CA.3: 6 residues within 4Å: Chain A: D.76, G.77, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:V.81, A:D.99, A:E.102 CA.8: 5 residues within 4Å: Chain B: T.23, D.25, D.100, E.102, W.104 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.25, B:D.25, B:D.100, B:D.100, B:E.102 CA.9: 4 residues within 4Å: Chain B: D.59, G.91, N.93, D.95 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.59, B:G.91, B:N.93, B:D.95, H2O.1, H2O.2 CA.10: 6 residues within 4Å: Chain B: D.76, G.77, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.76, B:G.77, B:G.79, B:V.81, B:D.99, B:E.102

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97, H2O.1 ZN.5: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: OHL.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.119, A:H.123, A:H.129, OHL.6 ZN.11: 4 residues within 4Å: Chain B: H.69, D.71, H.84, H.97 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.69, B:D.71, B:H.84, B:H.97, H2O.1 ZN.12: 4 residues within 4Å: Chain B: H.119, H.123, H.129 Ligands: OHL.13 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.119, B:H.123, B:H.129, OHL.13

2 x OHL: N-hydroxy-N~2~-[(4-methoxyphenyl)sulfonyl]-N~2~-(pyridin-4-ylmethyl)glycinamide(Non-covalent)

OHL.6: 14 residues within 4Å: Chain A: N.80, V.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, P.139, L.140, Y.141 Ligands: ZN.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.116, A:H.119, A:P.139, A:Y.141 Hydrogen bonds: A:A.83, A:A.83 OHL.13: 14 residues within 4Å: Chain B: N.80, V.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, P.139, L.140, Y.141 Ligands: ZN.12 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.116, B:H.119, B:P.139, B:Y.141 Hydrogen bonds: B:A.83, B:A.83

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 6 residues within 4Å: Chain A: L.26, P.27, K.28 Chain B: P.27, K.28 Ligands: SO4.14 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.28, B:K.28 Salt bridges: A:K.28, B:K.28 SO4.14: 6 residues within 4Å: Chain A: P.27, K.28 Chain B: L.26, P.27, K.28 Ligands: SO4.7 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.28, B:K.28 Salt bridges: A:K.28, B:K.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kowatz, T. et al., Non-Resonance Raman Difference Spectroscopy as a Tool to Probe Enthalpy-Entropy Compensation and the Interfacial Mobility Model. To be Published

Release Date

2011-06-29

Peptides

Stromelysin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Stromelysin-1

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