SMTL ID : 3oig.1

Crystal Structure of Enoyl-ACP Reductases I (FabI) from B. subtilis (complex with NAD and INH)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.14, V.15, A.16, S.20, I.21, A.41, L.45, C.66, D.67, V.68, T.69, C.94, I.95, A.96, F.97, I.121, L.146, T.147, Y.148, K.165, A.191, G.192, P.193, I.194, T.196, L.197, S.198 Ligands: IMJ.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.21, A:Y.148, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.67, A:V.68, A:I.95, A:A.96, A:K.165, A:I.194, A:I.194, A:S.198 Water bridges: A:A.22, A:A.41, A:A.41, A:I.95, A:L.197 NAD.3: 28 residues within 4Å: Chain B: G.14, V.15, A.16, S.20, I.21, A.41, L.45, C.66, D.67, V.68, T.69, C.94, I.95, A.96, F.97, I.121, L.146, T.147, Y.148, K.165, A.191, G.192, P.193, I.194, T.196, L.197, S.198 Ligands: IMJ.4 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:I.21, B:Y.148, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.67, B:V.68, B:I.95, B:A.96, B:K.165, B:I.194, B:I.194, B:S.198 Water bridges: B:A.22, B:A.41, B:A.41, B:I.95, B:L.197 NAD.5: 28 residues within 4Å: Chain C: G.14, V.15, A.16, S.20, I.21, A.41, L.45, C.66, D.67, V.68, T.69, C.94, I.95, A.96, F.97, I.121, L.146, T.147, Y.148, K.165, A.191, G.192, P.193, I.194, T.196, L.197, S.198 Ligands: IMJ.6 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.21, C:Y.148, C:A.191 Hydrogen bonds: C:G.14, C:S.20, C:I.21, C:D.67, C:V.68, C:I.95, C:A.96, C:K.165, C:I.194, C:I.194, C:T.196, C:S.198 Water bridges: C:A.22, C:A.41, C:A.41, C:I.95, C:L.197 NAD.7: 28 residues within 4Å: Chain D: G.14, V.15, A.16, S.20, I.21, A.41, L.45, C.66, D.67, V.68, T.69, C.94, I.95, A.96, F.97, I.121, L.146, T.147, Y.148, K.165, A.191, G.192, P.193, I.194, T.196, L.197, S.198 Ligands: IMJ.8 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.21, D:Y.148, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.67, D:V.68, D:I.95, D:A.96, D:K.165, D:I.194, D:I.194, D:T.196, D:S.198 Water bridges: D:A.22, D:A.41, D:A.41, D:I.95, D:L.197

4 x IMJ: (2E)-N-[(1,2-dimethyl-1H-indol-3-yl)methyl]-N-methyl-3-(7-oxo-5,6,7,8-tetrahydro-1,8-naphthyridin-3-yl)prop-2-enamide(Non-covalent)

IMJ.2: 13 residues within 4Å: Chain A: F.97, A.98, K.100, L.103, Y.148, N.157, Y.158, M.161, P.193, S.198, K.200, I.202 Ligands: NAD.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.103, A:Y.148, A:P.193, A:I.202, A:I.202 Hydrogen bonds: A:A.98, A:A.98 Water bridges: A:K.100, A:K.100 pi-Stacking: A:Y.158, A:Y.158 IMJ.4: 13 residues within 4Å: Chain B: F.97, A.98, K.100, L.103, Y.148, N.157, Y.158, M.161, P.193, S.198, K.200, I.202 Ligands: NAD.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.103, B:Y.148, B:P.193, B:I.202, B:I.202 Hydrogen bonds: B:A.98, B:A.98 Water bridges: B:K.100, B:K.100 pi-Stacking: B:Y.158, B:Y.158 IMJ.6: 13 residues within 4Å: Chain C: F.97, A.98, K.100, L.103, Y.148, N.157, Y.158, M.161, P.193, S.198, K.200, I.202 Ligands: NAD.5 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.103, C:Y.148, C:P.193, C:I.202, C:I.202 Hydrogen bonds: C:A.98, C:A.98, C:Y.158 Water bridges: C:K.100, C:K.100 pi-Stacking: C:Y.158, C:Y.158 IMJ.8: 13 residues within 4Å: Chain D: F.97, A.98, K.100, L.103, Y.148, N.157, Y.158, M.161, P.193, S.198, K.200, I.202 Ligands: NAD.7 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.103, D:Y.148, D:P.193, D:I.202, D:I.202 Hydrogen bonds: D:A.98, D:A.98, D:Y.158 Water bridges: D:K.100, D:K.100 pi-Stacking: D:Y.158, D:Y.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.-H. et al., Crystal Structures of Enoyl-ACP Reductases I (FabI) and III (FabL) from B. subtilis. J.Mol.Biol. (2011)

Release Date

2011-01-05

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Enoyl-[acyl-carrier-protein] reductase [NADH]

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