SMTL ID : 3oj0.1

Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.129, K.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.129 GOL.2: 2 residues within 4Å: Chain A: N.19, K.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19 GOL.3: 5 residues within 4Å: Chain A: I.54, Y.68, V.69, L.70 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.70 GOL.4: 2 residues within 4Å: Chain A: I.54 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.5: 7 residues within 4Å: Chain A: L.32, A.87, T.88, L.109, G.110, N.111, L.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.109 Water bridges: A:A.33 GOL.6: 4 residues within 4Å: Chain A: R.52, S.90, K.91, T.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.52, A:K.91, A:T.92, A:T.92

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 5 residues within 4Å: Chain A: K.5, V.6, S.7, S.10, R.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.6, A:S.7, A:S.10 Salt bridges: A:R.138 SO4.8: 5 residues within 4Å: Chain A: N.29, G.51, R.52, N.53, T.88 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.29, A:R.52, A:N.53, A:T.88, A:T.88 Water bridges: A:N.29 Salt bridges: A:R.52 SO4.9: 2 residues within 4Å: Chain A: G.30, M.31 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain). To be Published

Release Date

2010-09-01

Peptides

Glutamyl-tRNA reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamyl-tRNA reductase