SMTL ID : 3oja.1

Crystal structure of LRIM1/APL1C complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: S.42, N.64, D.86, H.105, T.350, V.351 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.351 Hydrogen bonds: A:V.351 NAG-NAG.2: 5 residues within 4Å: Chain A: Y.71, Q.93, N.110, K.370, E.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.370, A:K.370 Water bridges: A:A.371 NAG-NAG.3: 2 residues within 4Å: Chain A: N.469, Q.473 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: L.318 Chain B: N.224, N.243, R.492 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-MAN-MAN-MAN-MAN.4: 10 residues within 4Å: Chain A: N.431, I.434, R.435, W.437 Chain B: S.179, N.198, S.200, D.217, R.528, E.531 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.434 Hydrogen bonds: A:N.431, B:R.528

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain B: N.60, E.543, I.547 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.547 Hydrogen bonds: B:N.60, B:N.60 Water bridges: B:Q.544 NAG.7: 5 residues within 4Å: Chain B: Y.330, K.348, N.349, P.372, D.375 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.330, B:K.348 Water bridges: B:Y.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baxter, R.H. et al., A heterodimeric complex of the LRR proteins LRIM1 and APL1C regulates complement-like immunity in Anopheles gambiae. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-22

Peptides

Leucine-rich Immune Molecule 1: A
Anopheles Plasmodium-responsive Leucine-rich repeat protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucine-rich Immune Molecule 1

Anopheles Plasmodium-responsive Leucine-rich repeat protein 1