SMTL ID : 3ojl.1

Native structure of the UDP-N-acetyl-mannosamine dehydrogenase Cap5O from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: V.17, G.18, L.19, G.20, Y.21, I.22, D.41, I.42, N.43, A.90, V.91, P.92, T.93, L.107, R.110, A.111, S.129, T.130, E.162, R.163, V.164, C.269 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.22, A:R.163 Hydrogen bonds: A:G.18, A:L.19, A:Y.21, A:I.22, A:I.42, A:N.43, A:T.93, A:T.93, A:L.107, A:T.130, A:T.130 NAD.2: 20 residues within 4Å: Chain B: V.17, G.18, L.19, G.20, Y.21, I.22, D.41, I.42, A.90, V.91, P.92, T.93, L.107, R.110, A.111, S.129, T.130, E.162, V.164, R.333 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.22 Hydrogen bonds: B:L.19, B:L.19, B:Y.21, B:I.22, B:I.42, B:T.93, B:T.93, B:L.107, B:T.130 Water bridges: B:G.20, B:T.46 Salt bridges: B:R.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruszczyk, J. et al., Structure Analysis of the Staphylococcus aureus UDP-N-acetyl-mannosamine Dehydrogenase Cap5O Involved in Capsular Polysaccharide Biosynthesis. J.Biol.Chem. (2011)

Release Date

2011-03-23

Peptides

Cap5O: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cap5O

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