SMTL ID : 3oka.2 (1 other biounit)

Crystal structure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.206, V.208, R.210, R.239 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.206, A:R.210, A:R.239 SO4.2: 3 residues within 4Å: Chain A: P.209, R.239, R.283 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.239, A:R.283 SO4.3: 6 residues within 4Å: Chain A: L.127, P.128, G.129, S.130, R.131, Q.132 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.127, A:G.129, A:S.130, A:R.131, A:Q.132 Salt bridges: A:R.131 SO4.4: 2 residues within 4Å: Chain A: H.50, K.54 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.50, A:K.54 SO4.6: 3 residues within 4Å: Chain B: H.6, H.7, H.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.6, B:H.7, B:H.8, B:H.8 SO4.7: 3 residues within 4Å: Chain B: H.9, H.10, H.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.10, B:H.11 Salt bridges: B:H.9, B:H.10

1 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)

GDD.5: 14 residues within 4Å: Chain A: S.205, R.206, R.210, K.211, V.235, G.236, R.260, L.261, Y.263, M.266, E.290, I.294, V.295, E.298 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.206, A:R.210, A:L.261, A:L.261, A:L.261, A:E.290, A:E.298 Water bridges: A:G.293, A:I.294 Salt bridges: A:R.206, A:R.206, A:K.211, A:K.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batt, S.M. et al., Acceptor substrate discrimination in phosphatidyl-myo-inositol mannoside synthesis: structural and mutational analysis of mannosyltransferase Corynebacterium glutamicum PimB'. J.Biol.Chem. (2010)

Release Date

2010-09-15

Peptides

GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase: A
N-terminal His-affinity tag: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase

N-terminal His-affinity tag

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