SMTL ID : 3oko.1

Crystal structure of S25-39 in complex with Kdo(2.8)Kdo(2.4)Kdo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KDA- KDO- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid

KDA-KDO-KDO.1: 11 residues within 4Å: Chain A: Y.33, R.52, K.56, H.102, G.104, E.107 Chain B: R.33, Y.38, S.97, Y.98, R.101 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Salt bridges: B:R.33, A:R.52 Hydrogen bonds: B:N.31, B:S.97, B:R.101, B:R.101, A:Y.33, A:H.102 Water bridges: B:R.33, A:H.102

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain B: E.190, H.194 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.190, B:H.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blackler, R.J. et al., A Common NH53K Mutation in the Combining Site of Antibodies Raised against Chlamydial LPS Glycoconjugates Significantly Increases Avidity. Biochemistry (2011)

Release Date

2011-04-06

Peptides

S25-39 Fab (IgG1k) light chain: A
S25-39 Fab (IgG1k) heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S25-39 Fab (IgG1k) light chain

S25-39 Fab (IgG1k) heavy chain

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