SMTL ID : 3okx.1

Crystal structure of YaeB-like protein from Rhodopseudomonas palustris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 21 residues within 4Å: Chain A: L.39, C.42, P.43, R.44, H.45, Y.78, L.80, H.81, R.82, S.83, R.105, P.107, G.114, T.115, S.116, D.134, C.135, L.136, T.139 Chain B: K.145, R.148 20 PLIP interactions: 16 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:L.39, A:R.44, A:H.45, A:Y.78, A:H.81, A:H.81, A:R.82, A:S.83, A:T.115, A:D.134, A:L.136, A:T.139 Water bridges: A:G.46, B:R.148, B:R.148 Salt bridges: A:H.45, A:R.105, A:D.134, B:K.145, B:R.148 SAM.2: 22 residues within 4Å: Chain A: K.145, R.148, K.158 Chain B: L.39, C.42, P.43, R.44, H.45, Y.78, L.80, H.81, R.82, S.83, R.105, P.107, G.114, T.115, S.116, D.134, C.135, L.136, T.139 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:P.43, B:H.81, B:H.81, B:R.82, B:T.115, B:D.134, B:L.136, B:T.139, A:K.158, A:K.158 Water bridges: B:G.46, A:R.148, A:R.148 Salt bridges: B:H.45, B:R.105, B:D.134, A:K.145, A:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of YaeB-like protein from Rhodopseudomonas palustris. To be Published

Release Date

2010-09-08

Peptides

YaeB-like protein RPA0152: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YaeB-like protein RPA0152