SMTL ID : 3ol3.1

Crystal structure of a putative uncharacterized protein from Mycobacterium smegamtis, an ortholog of Rv0543c, iodide phased

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

21 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: F.12 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: K.41 Chain B: L.40 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: W.19, K.22 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: D.47, R.51 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: S.59, T.60 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: D.61, Q.63 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: R.94 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.42, K.81 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: H.76, E.80 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: E.46 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain B: F.12, M.13, V.16 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain B: D.68 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain B: K.22, R.72 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain B: E.48, R.51 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain B: R.51, R.58 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain B: I.56, S.59, T.60 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain B: R.58 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain B: K.81, E.82 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain B: H.76, E.80 Ligand excluded by PLIP IOD.23: 1 residues within 4Å: Chain B: R.94 Ligand excluded by PLIP IOD.24: 3 residues within 4Å: Chain B: P.29, P.30, K.31 Ligand excluded by PLIP

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.11: 11 residues within 4Å: Chain A: N.15, V.16, W.19, L.39, L.40, R.72, T.84, A.85, E.86, I.88 Ligands: PGE.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.15, A:R.72, A:R.72, A:A.85, A:E.86 Water bridges: A:T.84

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 8 residues within 4Å: Chain A: E.26, G.27, V.28, P.29 Chain B: E.26, G.27, V.28, P.29 No protein-ligand interaction detected (PLIP) PGE.13: 6 residues within 4Å: Chain A: W.19, G.23, L.39, E.82, P.83 Ligands: PG4.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.83 Water bridges: A:R.42, A:E.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchko, G.W. et al., Structural diversity in the Mycobacteria DUF3349 superfamily. Protein Sci. (2020)

Release Date

2010-09-08

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative uncharacterized protein

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