SMTL ID : 3on6.1

Crystal structure of an exo-alpha-1,6-mannosidase (bacova_03626) from bacteroides ovatus at 1.70 a resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: K.401, K.405, S.459, I.460, Q.461 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: N.290 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: D.226 Chain B: R.218 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: K.401, K.405, S.459, I.460, Q.461 Ligand excluded by PLIP

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: F.259, E.293, K.297 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.293, A:E.293, A:K.297, A:Y.311, A:Y.311 EDO.5: 2 residues within 4Å: Chain A: N.22, T.414 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.22 Water bridges: A:N.22, A:A.412, A:T.414 EDO.6: 6 residues within 4Å: Chain A: W.356, E.370, K.390, T.402, C.403, M.406 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.370 Water bridges: A:T.402 EDO.7: 7 residues within 4Å: Chain A: T.80, I.83, W.87, D.90, D.246, R.431, F.434 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.80, A:D.90, A:D.246, A:R.431, A:R.431 Water bridges: A:R.89, A:D.246, A:D.246 EDO.8: 5 residues within 4Å: Chain A: F.364, Y.379, D.380 Chain B: P.206, P.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.380 Water bridges: A:K.423, A:K.423 EDO.11: 3 residues within 4Å: Chain A: L.220, T.250 Chain B: N.230 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.230 Water bridges: A:T.250, A:T.250, A:T.250 EDO.12: 6 residues within 4Å: Chain B: W.356, E.370, K.390, T.402, C.403, M.406 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.370 Water bridges: B:K.390 EDO.13: 7 residues within 4Å: Chain B: T.80, I.83, W.87, D.90, D.246, R.431, F.434 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.90, B:R.431, B:R.431 Water bridges: B:R.89, B:D.246 EDO.14: 5 residues within 4Å: Chain A: P.206, P.231 Chain B: F.364, Y.379, D.380 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.380

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 5 residues within 4Å: Chain A: P.336, Y.337, V.343, F.392, K.447 3 PLIP interactions: 3 interactions with chain A Water bridges: A:F.392, A:T.393, A:E.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Bacterial protein of unknown function (BACOVA_03626) from Bacteroides ovatus at 1.70 A resolution. To be published

Release Date

2010-09-15

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein