SMTL ID : 3on7.1

Crystal structure of a Putative oxygenase (SO_2589) from Shewanella oneidensis at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.273, L.277 Chain D: R.273 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: H.255, P.256, S.257 Chain B: N.62, R.97 Ligands: GOL.3 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: R.273 Chain C: R.273 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: D.8, R.17 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: N.62, R.97 Chain B: H.255, P.256, S.257 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain C: H.255, P.256, S.257 Chain D: N.62, R.97 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: N.62, R.97 Chain D: H.255, P.256, S.257 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: A.145, N.146, H.255 Chain B: G.96, R.97, R.103 Ligands: CL.2 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.96, A:N.146 Water bridges: B:R.103, B:R.103, B:R.103, A:S.257 GOL.7: 6 residues within 4Å: Chain B: Y.157, L.183, E.188, V.233, R.245, S.247 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.188, B:S.247 Water bridges: B:Y.157, B:E.188, B:S.247 GOL.11: 6 residues within 4Å: Chain A: F.61, H.66, F.70 Chain C: R.63 Chain D: M.271, R.275 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.275, A:H.66

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 4 residues within 4Å: Chain C: Y.110, E.111, N.114, T.115 1 PLIP interactions: 1 interactions with chain C Water bridges: C:S.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative oxygenase (SO_2589) from Shewanella oneidensis at 2.20 A resolution. To be published

Release Date

2010-09-15

Peptides

Oxidoreductase, iron/ascorbate family: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxidoreductase, iron/ascorbate family