SMTL ID : 3onc.1

Bond breakage and relocation of a covalently bound bromine of IDD594 in a complex with hAR T113A mutant after moderate radiation dose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 33 residues within 4Å: Chain A: G.18, T.19, W.20, K.21, D.43, Y.48, K.77, H.110, W.111, S.159, N.160, Q.183, Y.209, S.210, P.211, L.212, G.213, S.214, P.215, D.216, L.228, A.245, I.260, P.261, K.262, S.263, V.264, T.265, R.268, E.271, N.272, C.298 Ligands: LDT.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.20, A:Y.209, A:Y.209, A:Y.209 Hydrogen bonds: A:T.19, A:W.20, A:D.43, A:S.159, A:N.160, A:Q.183, A:S.210, A:L.212, A:S.214, A:S.214, A:D.216, A:D.216, A:K.262, A:V.264, A:T.265, A:T.265, A:E.271, A:N.272 Water bridges: A:D.216, A:D.216, A:A.245, A:R.268, A:R.268, A:R.268 Salt bridges: A:K.21, A:K.262, A:R.268 pi-Cation interactions: A:R.268

1 x LDT: IDD594(Non-covalent)

LDT.2: 16 residues within 4Å: Chain A: W.20, V.47, Y.48, H.110, W.111, A.113, F.115, F.122, W.219, C.298, A.299, L.300, C.303, Y.309 Ligands: NAP.1, BR.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.20, A:Y.48, A:F.122, A:F.122, A:F.122, A:L.300, A:Y.309 Hydrogen bonds: A:Y.48, A:Y.48 Salt bridges: A:H.110 pi-Stacking: A:W.111, A:W.111 Halogen bonds: A:V.47

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 7 residues within 4Å: Chain A: W.111, P.112, A.113, D.308, Y.309, P.310 Ligands: LDT.2 Ligand excluded by PLIP

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 8 residues within 4Å: Chain A: H.46, Q.49, N.50, E.51, N.52, E.53, K.94, D.98 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.52 Water bridges: A:H.46, A:H.46, A:H.46, A:E.51, A:N.52, A:N.52, A:K.94, A:K.94 Salt bridges: A:H.46, A:K.94, A:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koch, C. et al., Radiation damage reveals promising interaction position. J.SYNCHROTRON RADIAT. (2011)

Release Date

2011-08-17

Peptides

Aldose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldose reductase

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