SMTL ID : 3oo2.1

2.37 Angstrom resolution crystal structure of an alanine racemase (alr) from Staphylococcus aureus subsp. aureus COL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: I.157, Y.160, L.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.160, A:L.163 NA.5: 4 residues within 4Å: Chain B: I.157, Q.158, Y.160, L.163 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.163

3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: A.173, C.174, D.176, E.177 Chain B: R.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.177, A:E.177 BME.3: 5 residues within 4Å: Chain A: Y.268, G.269, R.312, C.314 Chain B: R.141 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.141, B:R.141 BME.6: 3 residues within 4Å: Chain B: R.312, V.313, C.314 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.312

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: Y.46, N.206, S.207, R.222, G.224, I.225, Y.357 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.206, A:S.207, A:S.207, A:G.224, A:I.225 PO4.7: 7 residues within 4Å: Chain B: Y.46, N.206, S.207, P.223, G.224, I.225, Y.357 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.46, B:S.207, B:G.224, B:I.225, B:Y.357 Water bridges: B:A.208, B:A.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 2.37 Angstrom resolution crystal structure of an alanine racemase (alr) from Staphylococcus aureus subsp. aureus COL. TO BE PUBLISHED

Release Date

2010-10-06

Peptides

Alanine racemase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alanine racemase 1