SMTL ID : 3op1.2 (1 other biounit)

Crystal Structure of Macrolide-efflux Protein SP_1110 from Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: Y.28, H.33, H.36, K.164, S.166, S.167 Ligands: GOL.2, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.167 Water bridges: A:K.164, A:T.168 Salt bridges: A:H.33, A:H.36, A:K.164 SO4.7: 8 residues within 4Å: Chain B: Y.28, H.33, H.36, K.164, S.166, S.167 Ligands: GOL.8, GOL.10 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.167 Water bridges: B:K.164, B:T.168 Salt bridges: B:H.33, B:H.36, B:K.164

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: H.33, G.35, L.39, G.129, F.130, V.155, P.156, P.157, V.158, K.164 Ligands: SO4.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.130, A:V.155, A:V.158, A:V.158 GOL.3: 5 residues within 4Å: Chain A: L.26, G.27, Y.28, M.57, Y.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.27, A:Y.28, A:Y.132 Water bridges: A:Y.28, A:Y.28 GOL.4: 7 residues within 4Å: Chain A: G.27, Y.28, H.36, D.131, Y.132, K.164 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.28, A:H.36, A:D.131 GOL.5: 5 residues within 4Å: Chain A: Y.70, P.72, F.75, R.218 Chain B: V.214 No protein-ligand interaction detected (PLIP) GOL.6: 7 residues within 4Å: Chain A: Y.28, D.30, F.59, S.62, P.63, H.77, R.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.30, A:D.30, A:F.59, A:H.77, A:R.84 GOL.8: 11 residues within 4Å: Chain B: H.33, G.35, L.39, G.129, F.130, V.155, P.156, P.157, V.158, K.164 Ligands: SO4.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.130, B:V.155, B:V.158, B:V.158 GOL.9: 5 residues within 4Å: Chain B: L.26, G.27, Y.28, M.57, Y.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.27, B:Y.28 Water bridges: B:Y.28 GOL.10: 7 residues within 4Å: Chain B: G.27, Y.28, H.36, D.131, Y.132, K.164 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.28, B:H.36, B:D.131 GOL.11: 5 residues within 4Å: Chain A: V.214 Chain B: Y.70, P.72, F.75, R.218 No protein-ligand interaction detected (PLIP) GOL.12: 7 residues within 4Å: Chain B: Y.28, D.30, F.59, S.62, P.63, H.77, R.84 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.30, B:H.77, B:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Macrolide-efflux Protein SP_1110 from Streptococcus pneumoniae. TO BE PUBLISHED

Release Date

2010-09-29

Peptides

Macrolide-efflux protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Macrolide-efflux protein

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