SMTL ID : 3opt.1

Crystal structure of the Rph1 catalytic core with a-ketoglutarate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 10 residues within 4Å: Chain A: Y.183, Y.224, F.232, S.243, N.245, K.253, W.255, T.317, H.323 Ligands: NI.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.232, A:F.232, A:W.255 Hydrogen bonds: A:S.243 Salt bridges: A:K.253, A:H.323

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.235, E.237, H.323 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.235, A:E.237, A:H.323, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, Y. et al., Crystal structure of the catalytic core of Saccharomyces cerevesiae histone demethylase Rph1: insights into the substrate specificity and catalytic mechanism. Biochem.J. (2011)

Release Date

2010-12-22

Peptides

DNA damage-responsive transcriptional repressor RPH1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA damage-responsive transcriptional repressor RPH1

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