SMTL ID : 3opx.1

Crystal structure of pyrimidine 5 -nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5'-monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.38, D.203 Ligands: U5P.2 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.38, A:D.203, H2O.2, H2O.2, U5P.2

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.2: 12 residues within 4Å: Chain A: I.37, D.38, M.52, Y.79, L.84, D.105, T.140, N.141, A.142, Y.168, K.177 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:I.37, A:D.38, A:D.38, A:Y.79, A:D.105, A:T.140, A:T.140, A:N.141, A:A.142, A:Y.168 Water bridges: A:K.177, A:K.177, A:N.207 Salt bridges: A:K.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, N. et al., Crystal structure of pyrimidine 5 -nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5'-monophosphate. To be published

Release Date

2011-03-02

Peptides

Protein SSM1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein SSM1