- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.2: 7 residues within 4Å:- Chain A: S.17, D.20, P.21, G.22, G.23, R.26, K.70
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.17, A:S.17, A:G.22, A:G.23, A:R.26, A:R.26, A:K.70
- Water bridges: A:S.17
TRS.13: 7 residues within 4Å:- Chain C: S.17, D.20, P.21, G.22, G.23, R.26, K.70
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:S.17, C:S.17, C:G.22, C:G.23, C:R.26, C:R.26, C:K.70
- Water bridges: C:S.17
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: K.57, R.61
8 PLIP interactions:8 interactions with chain A- Water bridges: A:K.57, A:K.57, A:H.60, A:H.60, A:R.61, A:R.61
- Salt bridges: A:K.57, A:R.61
SO4.5: 7 residues within 4Å:- Chain A: L.27, R.28, A.31, R.40, Y.43
- Chain D: Q.24, R.28
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:Y.43, D:R.28
- Water bridges: A:R.28, A:R.28, A:R.40, A:R.40, A:R.40, A:R.40, A:Y.43
- Salt bridges: A:R.40
SO4.6: 6 residues within 4Å:- Chain A: L.78, G.79, A.80, N.81, K.85
- Ligands: CIT.7
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:A.80, A:N.81, A:N.81
- Water bridges: A:K.85, A:K.85
- Salt bridges: A:K.85
SO4.8: 2 residues within 4Å:- Chain A: R.28, R.29
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.28, A:R.28
- Salt bridges: A:R.28, A:R.29
SO4.11: 6 residues within 4Å:- Chain B: L.78, G.79, A.80, N.81, K.85
- Ligands: CIT.10
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.80, B:N.81, B:N.81
- Water bridges: B:K.85
- Salt bridges: B:K.85
SO4.15: 2 residues within 4Å:- Chain C: K.57, R.61
8 PLIP interactions:8 interactions with chain C- Water bridges: C:K.57, C:K.57, C:H.60, C:H.60, C:R.61, C:R.61
- Salt bridges: C:K.57, C:R.61
SO4.16: 7 residues within 4Å:- Chain B: Q.24, R.28
- Chain C: L.27, R.28, A.31, R.40, Y.43
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:Y.43, B:R.28
- Water bridges: C:R.28, C:R.28, C:R.40, C:R.40, C:R.40, C:R.40, C:Y.43
- Salt bridges: C:R.40
SO4.17: 6 residues within 4Å:- Chain C: L.78, G.79, A.80, N.81, K.85
- Ligands: CIT.18
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:A.80, C:N.81, C:N.81
- Water bridges: C:K.85, C:K.85
- Salt bridges: C:K.85
SO4.19: 2 residues within 4Å:- Chain C: R.28, R.29
4 PLIP interactions:4 interactions with chain C- Water bridges: C:R.28, C:R.28
- Salt bridges: C:R.28, C:R.29
SO4.22: 6 residues within 4Å:- Chain D: L.78, G.79, A.80, N.81, K.85
- Ligands: CIT.21
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:A.80, D:N.81, D:N.81
- Water bridges: D:K.85
- Salt bridges: D:K.85
- 6 x CIT: CITRIC ACID(Non-functional Binders)
CIT.7: 6 residues within 4Å:- Chain A: G.79, A.80, N.81, K.85
- Chain B: K.85
- Ligands: SO4.6
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:A.80
- Hydrogen bonds: A:A.80, A:N.81, A:N.81, A:K.85
- Salt bridges: A:K.85, A:K.85, B:K.85
- Water bridges: B:K.85, B:K.85, B:K.85
CIT.9: 5 residues within 4Å:- Chain B: P.21, G.22, R.25, R.26, R.29
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.22
- Water bridges: B:R.25, B:R.29
- Salt bridges: B:R.26, B:R.29, B:R.29
CIT.10: 6 residues within 4Å:- Chain B: L.78, G.79, A.80, N.81, K.85
- Ligands: SO4.11
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:L.78, B:A.80, B:N.81, B:N.81, B:K.85
- Salt bridges: B:K.85
CIT.18: 6 residues within 4Å:- Chain C: G.79, A.80, N.81, K.85
- Chain D: K.85
- Ligands: SO4.17
11 PLIP interactions:4 interactions with chain D, 7 interactions with chain C- Water bridges: D:K.85, D:K.85, D:K.85
- Salt bridges: D:K.85, C:K.85, C:K.85
- Hydrophobic interactions: C:A.80
- Hydrogen bonds: C:A.80, C:N.81, C:N.81, C:K.85
CIT.20: 5 residues within 4Å:- Chain D: P.21, G.22, R.25, R.26, R.29
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:G.22
- Water bridges: D:R.25, D:R.29
- Salt bridges: D:R.26, D:R.29, D:R.29
CIT.21: 6 residues within 4Å:- Chain D: L.78, G.79, A.80, N.81, K.85
- Ligands: SO4.22
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:L.78, D:A.80, D:N.81, D:N.81, D:K.85
- Salt bridges: D:K.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Samai, P. et al., Structure of a CRISPR-associated protein Cas2 from Desulfovibrio vulgaris. Acta Crystallogr.,Sect.F (2010)
- Release Date
- 2010-12-22
- Peptides
- CRISPR-associated protein Cas2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Samai, P. et al., Structure of a CRISPR-associated protein Cas2 from Desulfovibrio vulgaris. Acta Crystallogr.,Sect.F (2010)
- Release Date
- 2010-12-22
- Peptides
- CRISPR-associated protein Cas2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B