SMTL ID : 3orj.1

Crystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at 2.16 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: N.203, D.205, Q.237, A.239, D.416 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.203, A:D.205, A:Q.237, A:A.239, H2O.2

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: K.197 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: E.44, G.45, K.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.45 EDO.4: 5 residues within 4Å: Chain A: N.49, G.50, L.51, P.65, V.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.49, A:G.50, A:L.51 EDO.5: 5 residues within 4Å: Chain A: M.123, L.200, N.203, Q.237, N.417 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.203 Water bridges: A:D.205, A:D.205, A:Q.237, A:N.417 EDO.6: 4 residues within 4Å: Chain A: A.111, A.112, G.136, N.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.112, A:A.112, A:N.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at 2.16 A resolution. To be published

Release Date

2010-10-13

Peptides

sugar-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

sugar-binding protein