SMTL ID : 3osd.1

Crystal structure of a putative glycosyl hydrolase (BT2157) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: F.47, W.50, V.58 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:F.47, A:W.50, H2O.2, H2O.4, H2O.7 K.2: 5 residues within 4Å: Chain A: N.109, S.110, E.139, Q.141, Q.248 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.110, A:E.139, H2O.9

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: G.73, G.75, S.105, G.251, D.252, D.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.105, A:D.253, A:D.253 EDO.4: 6 residues within 4Å: Chain A: Y.134, E.139, Y.165, K.220, F.221, Q.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.139, A:K.220, A:K.220, A:Q.248 EDO.5: 5 residues within 4Å: Chain A: K.94, N.95, V.263, L.264, D.265 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.95, A:N.95 Water bridges: A:K.94, A:K.94, A:N.95, A:D.265 EDO.6: 4 residues within 4Å: Chain A: W.208, T.209, K.210, Q.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.210, A:Q.211 EDO.7: 4 residues within 4Å: Chain A: V.13, A.14, I.39, H.91 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.91 EDO.8: 6 residues within 4Å: Chain A: I.168, Y.205, H.206, Q.211, W.212, L.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.206, A:H.206 EDO.9: 5 residues within 4Å: Chain A: D.66, C.68, K.103, W.181 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.66, A:K.103 EDO.10: 3 residues within 4Å: Chain A: K.22, A.23, K.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.23, A:K.92 EDO.11: 3 residues within 4Å: Chain A: K.103, W.255 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.12: 5 residues within 4Å: Chain A: R.57, V.58, P.59, S.60, W.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.57, A:W.62 Water bridges: A:I.64 EDO.13: 3 residues within 4Å: Chain A: V.171, P.172, Q.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.173 Water bridges: A:Q.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative glycosyl hydrolase (BT2157) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.80 A resolution. To be published

Release Date

2010-10-13

Peptides

putative glycosyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative glycosyl hydrolase