SMTL ID : 3osu.1 (1 other biounit)

Crystal structure of the 3-oxoacyl-acyl carrier protein reductase, FabG, from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

28 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: T.93, V.143, N.148, Q.151, Y.154, F.186, D.190 Ligand excluded by PLIP PEG.2: 4 residues within 4Å: Chain A: D.95, N.96, P.149, G.150 Ligand excluded by PLIP PEG.3: 3 residues within 4Å: Chain A: E.48, A.51, K.52 Ligand excluded by PLIP PEG.4: 5 residues within 4Å: Chain A: G.11, N.89, A.90, G.91, I.92 Ligand excluded by PLIP PEG.5: 5 residues within 4Å: Chain A: I.73, K.74, P.126, Q.127, R.130 Ligand excluded by PLIP PEG.6: 7 residues within 4Å: Chain A: R.170 Chain B: V.146, G.147, N.148, F.186, Q.206, M.244 Ligand excluded by PLIP PEG.7: 6 residues within 4Å: Chain A: M.3, G.28, K.52, G.53, V.54 Ligands: PEG.8 Ligand excluded by PLIP PEG.8: 3 residues within 4Å: Chain A: K.50, G.53 Ligands: PEG.7 Ligand excluded by PLIP PEG.9: 5 residues within 4Å: Chain A: N.62, A.64, R.94, D.108, T.112 Ligand excluded by PLIP PEG.14: 7 residues within 4Å: Chain A: G.144, A.145, I.162, K.166 Chain B: A.145, I.162, K.166 Ligand excluded by PLIP PEG.15: 7 residues within 4Å: Chain A: V.146, G.147, N.148, F.186, Q.206, M.244 Chain B: R.170 Ligand excluded by PLIP PEG.16: 6 residues within 4Å: Chain B: I.73, K.74, V.77, P.126, Q.127, R.130 Ligand excluded by PLIP PEG.17: 4 residues within 4Å: Chain B: G.11, N.89, A.90, G.91 Ligand excluded by PLIP PEG.18: 4 residues within 4Å: Chain B: Q.151, Y.154, F.186, D.190 Ligand excluded by PLIP PEG.19: 7 residues within 4Å: Chain C: T.93, V.143, N.148, Q.151, Y.154, F.186, D.190 Ligand excluded by PLIP PEG.20: 4 residues within 4Å: Chain C: D.95, N.96, P.149, G.150 Ligand excluded by PLIP PEG.21: 3 residues within 4Å: Chain C: E.48, A.51, K.52 Ligand excluded by PLIP PEG.22: 5 residues within 4Å: Chain C: G.11, N.89, A.90, G.91, I.92 Ligand excluded by PLIP PEG.23: 5 residues within 4Å: Chain C: I.73, K.74, P.126, Q.127, R.130 Ligand excluded by PLIP PEG.24: 7 residues within 4Å: Chain C: R.170 Chain D: V.146, G.147, N.148, F.186, Q.206, M.244 Ligand excluded by PLIP PEG.25: 6 residues within 4Å: Chain C: M.3, G.28, K.52, G.53, V.54 Ligands: PEG.26 Ligand excluded by PLIP PEG.26: 3 residues within 4Å: Chain C: K.50, G.53 Ligands: PEG.25 Ligand excluded by PLIP PEG.27: 5 residues within 4Å: Chain C: N.62, A.64, R.94, D.108, T.112 Ligand excluded by PLIP PEG.32: 7 residues within 4Å: Chain C: G.144, A.145, I.162, K.166 Chain D: A.145, I.162, K.166 Ligand excluded by PLIP PEG.33: 7 residues within 4Å: Chain C: V.146, G.147, N.148, F.186, Q.206, M.244 Chain D: R.170 Ligand excluded by PLIP PEG.34: 6 residues within 4Å: Chain D: I.73, K.74, V.77, P.126, Q.127, R.130 Ligand excluded by PLIP PEG.35: 4 residues within 4Å: Chain D: G.11, N.89, A.90, G.91 Ligand excluded by PLIP PEG.36: 4 residues within 4Å: Chain D: Q.151, Y.154, F.186, D.190 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.10: 2 residues within 4Å: Chain A: R.14, K.41 No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain A: N.89, A.90, G.91, K.158 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.89, H2O.2 MG.28: 2 residues within 4Å: Chain C: R.14, K.41 No protein-ligand interaction detected (PLIP) MG.29: 4 residues within 4Å: Chain C: N.89, A.90, G.91, K.158 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:N.89, H2O.10

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.12: 3 residues within 4Å: Chain A: Q.127, R.130, Q.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.131 Salt bridges: A:R.130 PO4.13: 6 residues within 4Å: Chain A: K.5, Y.29, D.84, G.134, A.226, D.228 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.29, A:D.84, A:G.134, A:A.135 Water bridges: A:T.178, A:S.227 Salt bridges: A:K.5 PO4.30: 3 residues within 4Å: Chain C: Q.127, R.130, Q.131 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.131 Salt bridges: C:R.130 PO4.31: 6 residues within 4Å: Chain C: K.5, Y.29, D.84, G.134, A.226, D.228 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.84, C:G.134, C:A.135 Water bridges: C:T.178, C:S.227 Salt bridges: C:K.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, S.M. et al., Crystal structure of the 3-oxoacyl-acyl carrier protein reductase, FabG, from Staphylococcus aureus. To be Published

Release Date

2010-09-29

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-[acyl-carrier-protein] reductase

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