SMTL ID : 3otk.4 (5 other biounits)

Structure and mechanisim of core 2 beta1,6-n-acetylglucosaminyltransferase: a Metal-ion independent gt-a glycosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.21, T.23, K.24 No protein-ligand interaction detected (PLIP)

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 10 residues within 4Å: Chain A: V.91, V.92, H.93, D.118, K.120, V.148, Y.150, R.155, S.180, R.341 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.91, A:H.93, A:D.118, A:D.118, A:K.120, A:R.341 Water bridges: A:G.181, A:M.182 Salt bridges: A:R.341 pi-Stacking: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pak, J.E. et al., Structural and mechanistic characterization of leukocyte-type core 2 beta 1,6-N-acetylglucosaminyltransferase: a metal-ion-independent GT-A glycosyltransferase. J.Mol.Biol. (2011)

Release Date

2011-09-14

Peptides

Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase

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