SMTL ID : 3oug.3 (2 other biounits)

Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-octamer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: S.28, N.75, P.77, A.78 Chain C: R.57 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: R.57 Chain B: S.28, N.75, P.77, A.78 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: R.57 Chain D: S.28, N.75, P.77, A.78 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: S.28, N.75, P.77, A.78 Chain D: R.57 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain E: R.57 Chain H: S.28, N.75, P.77, A.78 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain F: R.57 Chain G: S.28, N.75, P.77, A.78 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain E: S.28, N.75, P.77, A.78 Chain G: R.57 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain F: S.28, N.75, P.77, A.78 Chain H: R.57 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: S.7 Chain B: S.7, K.46, Y.93 Chain D: K.46 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.7, B:S.7, B:S.7, B:K.46 Water bridges: A:S.7, B:Y.93 GOL.6: 6 residues within 4Å: Chain A: K.46 Chain C: S.7, K.46, E.59, Y.93 Chain D: S.7 8 PLIP interactions: 1 interactions with chain A, 4 interactions with chain C, 3 interactions with chain D Hydrogen bonds: A:K.46, C:S.7, C:S.7, C:K.46, C:E.59, D:S.7, D:S.7 Water bridges: D:S.7 GOL.8: 7 residues within 4Å: Chain E: S.7, K.46, Y.93 Chain G: S.7 Chain H: K.46 Ligands: GOL.9, GOL.13 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain G Hydrogen bonds: E:S.7, E:S.7, E:K.46, E:Y.93, G:S.7 Water bridges: E:K.46, E:Y.93 GOL.9: 8 residues within 4Å: Chain E: S.7 Chain F: K.46 Chain H: S.7, K.46, Y.93, Q.95 Ligands: GOL.8, GOL.12 9 PLIP interactions: 6 interactions with chain H, 3 interactions with chain E Hydrogen bonds: H:S.7, H:S.7, H:K.46, H:K.46, H:Q.95, E:S.7 Water bridges: H:K.46, E:S.7, E:S.7 GOL.12: 7 residues within 4Å: Chain F: S.7, K.46, Y.93 Chain G: K.46 Chain H: S.7 Ligands: GOL.9, GOL.13 7 PLIP interactions: 2 interactions with chain H, 1 interactions with chain G, 4 interactions with chain F Hydrogen bonds: H:S.7, H:S.7, G:K.46, F:S.7, F:K.46, F:K.46 Water bridges: F:K.46 GOL.13: 8 residues within 4Å: Chain E: K.46 Chain F: S.7 Chain G: S.7, K.46, Y.93, Q.95 Ligands: GOL.8, GOL.12 7 PLIP interactions: 1 interactions with chain E, 4 interactions with chain G, 2 interactions with chain F Hydrogen bonds: E:K.46, G:S.7, G:K.46, G:K.46, F:S.7, F:S.7 Water bridges: G:K.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis. To be Published

Release Date

2010-10-20

Peptides

Aspartate 1-decarboxylase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
G

G
H

H
I

Aspartate 1-decarboxylase

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