SMTL ID : 3oui.1

PHD2-R717 with 40787422

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: D.176, I.177, E.178, R.183 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.178 Hydrogen bonds: A:D.176, A:E.178 Salt bridges: A:R.183 ACT.2: 3 residues within 4Å: Chain A: K.153, D.154, K.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.154, A:D.154 Water bridges: A:W.155, A:F.181

1 x FE2: FE (II) ION(Non-covalent)

FE2.3: 4 residues within 4Å: Chain A: H.134, D.136, H.195 Ligands: 42Z.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.195, H2O.1

2 x 42Z: N-[(5,6-dichloro-1H-benzimidazol-2-yl)carbonyl]glycine(Non-covalent)

42Z.4: 13 residues within 4Å: Chain A: R.73, M.120, Y.131, H.134, D.136, I.148, Y.150, L.164, H.195, V.197, R.204, W.210 Ligands: FE2.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.124, A:Y.124 Salt bridges: A:R.204 pi-Stacking: A:W.210 42Z.5: 11 residues within 4Å: Chain A: V.20, N.24, I.101, C.104, N.105, K.107, S.110, Y.111, I.113, V.145, W.188 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.111, A:W.188 Hydrogen bonds: A:N.24, A:N.24, A:N.24 Salt bridges: A:K.107

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: T.53, K.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosen, M.D. et al., Benzimidazole-2-pyrazole HIF Prolyl 4-Hydroxylase Inhibitors as Oral Erythropoietin Secretagogues. ACS Med Chem Lett (2010)

Release Date

2010-12-01

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1