SMTL ID : 3ouo.1 (1 other biounit)

Structure of the Nucleoprotein from Rift Valley Fever Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x NO2: NITRITE ION(Non-covalent)

NO2.1: 6 residues within 4Å: Chain A: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.32, A:A.202, A:A.202 Water bridges: A:A.203, A:S.206 NO2.2: 6 residues within 4Å: Chain B: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.32, B:F.33, B:F.33, B:A.202 Water bridges: B:Q.31 NO2.3: 6 residues within 4Å: Chain C: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.32, C:A.202, C:A.202 Water bridges: C:A.203, C:S.206 NO2.4: 6 residues within 4Å: Chain D: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.32, D:F.33, D:F.33, D:A.202 Water bridges: D:Q.31 NO2.5: 6 residues within 4Å: Chain E: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.32, E:A.202, E:A.202 Water bridges: E:A.203, E:S.206 NO2.6: 6 residues within 4Å: Chain F: Q.31, G.32, F.33, A.202, A.203, S.206 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.32, F:F.33, F:F.33, F:A.202 Water bridges: F:Q.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferron, F. et al., The hexamer structure of Rift Valley fever virus nucleoprotein suggests a mechanism for its assembly into ribonucleoprotein complexes. Plos Pathog. (2011)

Release Date

2011-05-25

Peptides

Nucleoprotein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Nucleoprotein

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