SMTL ID : 3ov6.1

CD1c in complex with MPM (mannosyl-beta1-phosphomycoketide)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.137, W.140 No protein-ligand interaction detected (PLIP)

1 x D12: DODECANE(Non-covalent)

D12.2: 9 residues within 4Å: Chain A: Y.190, G.193, L.194, I.198, F.231, V.233, V.261, L.265 Ligands: MK0.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.190, A:Y.190, A:L.194, A:L.194, A:I.198, A:F.231, A:V.233, A:L.265

1 x MK0: 1-O-[(S)-hydroxy{[(4S,8S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-beta-D-mannopyranose(Non-covalent)

MK0.3: 25 residues within 4Å: Chain A: F.127, V.129, Q.131, Q.144, G.145, S.146, H.155, G.156, W.157, I.164, L.180, L.186, F.187, F.189, Y.190, L.191, G.193, A.217, F.231, V.272, T.275, L.279, C.284, F.287 Ligands: D12.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.127, A:V.129, A:V.129, A:H.155, A:W.157, A:W.157, A:I.164, A:L.180, A:L.186, A:L.186, A:F.187, A:Y.190, A:Y.190, A:L.191, A:A.217, A:F.231, A:T.275, A:L.279, A:L.279, A:F.287, A:F.287 Water bridges: A:T.275, A:T.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scharf, L. et al., The 2.5 A structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation. Immunity (2010)

Release Date

2011-01-19

Peptides

Beta-2-microglobulin, T-cell surface glycoprotein CD1c, T-cell surface glycoprotein CD1b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-2-microglobulin, T-cell surface glycoprotein CD1c, T-cell surface glycoprotein CD1b