SMTL ID : 3ovp.1

Crystal Structure of hRPE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.35, D.37, H.70, D.175 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.35, A:D.37, A:H.70, A:D.175, H2O.1, H2O.2 FE2.5: 4 residues within 4Å: Chain B: H.35, D.37, H.70, D.175 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.35, B:D.37, B:H.70, B:D.175, H2O.6, H2O.7

6 x XPE: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL(Non-covalent)

XPE.2: 6 residues within 4Å: Chain A: G.4, K.6, D.32, F.66, D.171, M.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.4, A:K.6 Water bridges: A:F.66 XPE.3: 4 residues within 4Å: Chain A: P.121, G.122, M.153, D.155 No protein-ligand interaction detected (PLIP) XPE.4: 4 residues within 4Å: Chain A: H.161, K.185, E.188, A.189 No protein-ligand interaction detected (PLIP) XPE.6: 8 residues within 4Å: Chain B: G.4, K.6, D.32, Y.33, F.66, D.171, N.192, M.193 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.6 XPE.7: 6 residues within 4Å: Chain B: R.58, Q.63, G.87, A.88, N.89, G.112 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.58 Water bridges: B:N.89 XPE.8: 3 residues within 4Å: Chain B: S.124, E.126, W.162 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.G. et al., Conversion of D-ribulose 5-phosphate to D-xylulose 5-phosphate: new insights from structural and biochemical studies on human RPE. Faseb J. (2011)

Release Date

2011-03-09

Peptides

Ribulose-phosphate 3-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribulose-phosphate 3-epimerase

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