SMTL ID : 3oy4.1

Crystal Structure of HIV-1 L76V Protease in Complex with the Protease Inhibitor Darunavir.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: P.1 No protein-ligand interaction detected (PLIP) PO4.2: 4 residues within 4Å: Chain A: W.6, K.7, R.8 Chain B: R.87 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.8 Water bridges: B:D.29 Salt bridges: B:R.87 PO4.6: 3 residues within 4Å: Chain B: R.14, G.16, G.17 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.16, B:G.17 Water bridges: B:P.63 Salt bridges: B:R.14 PO4.7: 3 residues within 4Å: Chain B: K.20, E.21, N.83 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.21, B:N.83 Water bridges: B:E.34

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.4: 3 residues within 4Å: Chain A: G.73, T.74, N.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.74, A:N.88 ACT.5: 2 residues within 4Å: Chain A: T.91, Q.92 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.92 ACT.8: 2 residues within 4Å: Chain B: M.36, N.37 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.37 ACT.9: 3 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:R.87, A:R.87 Salt bridges: A:R.87, B:R.8 Hydrogen bonds: B:R.8 ACT.10: 3 residues within 4Å: Chain B: R.14, G.17, L.19 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:R.14, B:L.19 Water bridges: B:R.14, B:R.14 Salt bridges: B:R.14 ACT.11: 1 residues within 4Å: Chain B: Q.58 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.58

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.12: 24 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.82 20 PLIP interactions: 9 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:L.23, B:V.82, A:L.23, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, A:D.30, A:D.30 Water bridges: B:I.50, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiffer, C.A. et al., Crystal Structure of HIV-1 L76V Protease in Complex with the Protease Inhibitor Darunavir. To be Published

Release Date

2011-02-09

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE