SMTL ID : 3oy7.1

Crystal structure of a virus encoded glycosyltransferase in complex with GDP-mannose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

2 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)

GDD.1: 24 residues within 4Å: Chain A: P.13, G.15, Y.16, R.18, Y.88, D.115, L.116, V.117, M.140, H.162, M.190, R.192, R.196, K.197, L.262, D.264, V.267, E.284, G.285, F.286, G.287, L.288, C.289, E.292 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.15, A:Y.88, A:D.115, A:H.162, A:R.192, A:R.192, A:L.262, A:L.262, A:L.262, A:E.284, A:E.284, A:G.285, A:F.286, A:G.287, A:L.288, A:E.292 Salt bridges: A:R.196, A:R.196, A:K.197, A:K.197, A:K.197, A:D.264 GDD.2: 21 residues within 4Å: Chain B: R.18, Y.88, D.115, M.140, H.162, M.190, R.192, R.196, K.197, V.261, L.262, T.263, D.264, V.267, E.284, G.285, F.286, G.287, L.288, C.289, E.292 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:Y.88, B:Y.88, B:D.115, B:R.192, B:L.262, B:L.262, B:D.264, B:G.285, B:F.286, B:G.287, B:L.288, B:C.289, B:E.292 Salt bridges: B:R.196, B:K.197, B:K.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Y. et al., Crystal structure of a virus-encoded putative glycosyltransferase. J.Virol. (2010)

Release Date

2010-11-17

Peptides

Glycosyltransferase B736L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase B736L

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