SMTL ID : 3ozc.1

Crystal Structure of human 5'-deoxy-5'-methyladenosine phosphorylase in complex with pCl-phenylthioDADMeImmA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-trimer

Ligands

3 x 4CT: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol(Non-covalent)

4CT.1: 22 residues within 4Å: Chain A: T.18, H.61, H.65, P.69, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.233, V.236, L.237 Chain C: H.137, L.279 Ligands: PO4.2 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:T.18, A:T.18, A:V.233, A:L.237, C:L.279, C:L.279 Hydrogen bonds: A:T.18, A:D.220, A:D.222, A:D.222 pi-Stacking: A:F.177 4CT.3: 22 residues within 4Å: Chain A: H.137, L.279 Chain B: T.18, H.61, H.65, P.69, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.233, V.236, L.237 Ligands: PO4.4 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.18, B:T.18, B:V.233, B:L.237, A:L.279, A:L.279 Hydrogen bonds: B:T.18, B:D.220, B:D.222, B:D.222 pi-Stacking: B:F.177 4CT.5: 22 residues within 4Å: Chain B: H.137, L.279 Chain C: T.18, H.61, H.65, P.69, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.233, V.236, L.237 Ligands: PO4.6 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:T.18, C:T.18, C:V.233, C:L.237, B:L.279, B:L.279 Hydrogen bonds: C:T.18, C:D.220, C:D.222, C:D.222 pi-Stacking: C:F.177

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: 4CT.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.18, A:T.18, A:A.94, A:A.94 Salt bridges: A:R.60, A:H.61 PO4.4: 8 residues within 4Å: Chain B: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: 4CT.3 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.18, B:T.18, B:A.94, B:A.94 Salt bridges: B:R.60, B:H.61 PO4.6: 8 residues within 4Å: Chain C: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: 4CT.5 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.18, C:T.18, C:A.94, C:A.94 Salt bridges: C:R.60, C:H.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ho, M. et al., Crystal Structure of human 5'-deoxy-5'-methyladenosine phosphorylase. to be published

Release Date

2011-09-28

Peptides

S-methyl-5'-thioadenosine phosphorylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

S-methyl-5'-thioadenosine phosphorylase

Related Entries With Identical Sequence