SMTL ID : 3ozx.1 (1 other biounit)

Crystal structure of ABCE1 of Sulfolubus solfataricus (-FeS domain)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.308, Q.337, Q.411 Ligands: ADP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.308, H2O.1, H2O.1, H2O.5 MG.2: 4 residues within 4Å: Chain A: T.39, Q.93, Q.164 Ligands: ADP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.39, H2O.1, H2O.2, H2O.4

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 13 residues within 4Å: Chain A: L.279, F.282, P.302, N.303, G.304, I.305, G.306, K.307, T.308, T.309, Q.337, E.464 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:P.302, A:N.303, A:G.304, A:G.304, A:I.305, A:G.306, A:K.307, A:T.308, A:T.309, A:T.309, A:Q.337 Water bridges: A:T.308, A:T.308, A:T.308, A:T.308, A:R.312, A:R.312, A:E.464 Salt bridges: A:K.307 ADP.4: 11 residues within 4Å: Chain A: Y.9, F.14, N.34, G.35, V.36, G.37, K.38, T.39, T.40, S.215 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:K.33, A:N.34, A:G.35, A:V.36, A:G.37, A:K.38, A:T.39, A:T.39, A:T.39, A:T.40 Water bridges: A:K.38, A:K.38, A:Q.93, A:Y.94 Salt bridges: A:K.38 pi-Stacking: A:Y.9, A:Y.9

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: Q.337, Q.411, S.414, Y.415 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.337, A:S.414, A:S.414, A:Y.415 Water bridges: A:I.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barthelme, D. et al., Ribosome Recycling in Archaea A Mechanistic Link between FeS Cluster Biosynthesis and Conformational Switch of Twin-ATPase ABCE1. To be Published

Release Date

2011-02-02

Peptides

RNase L inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNase L inhibitor

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