SMTL ID : 3p2y.1

Crystal structure of alanine dehydrogenase/pyridine nucleotide transhydrogenase from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: M.22, D.86 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:M.22, H2O.13, H2O.13, H2O.13 CA.2: 1 residues within 4Å: Chain A: G.76 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.76, H2O.8, H2O.8, H2O.14 CA.3: 2 residues within 4Å: Chain A: D.352, L.355 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.352, A:L.355, H2O.6, H2O.12 CA.7: 2 residues within 4Å: Chain B: M.22, D.86 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:M.22, H2O.28, H2O.28, H2O.28 CA.8: 1 residues within 4Å: Chain B: G.76 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.76, H2O.22, H2O.23, H2O.28 CA.9: 2 residues within 4Å: Chain B: D.352, L.355 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.352, B:L.355, H2O.20, H2O.27

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: K.265 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.265, A:K.265, A:D.267 NA.10: 1 residues within 4Å: Chain B: K.265 2 PLIP interactions: 2 interactions with chain B Water bridges: B:F.266, B:D.267

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: G.315, R.316, T.317, T.326, S.327, P.328 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.315, A:T.317 Water bridges: A:T.317 EDO.6: 5 residues within 4Å: Chain A: K.159, L.163, L.331, T.334 Chain B: S.166 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.159, A:K.159 Water bridges: A:T.334, B:S.166, B:S.166, B:S.166 EDO.11: 6 residues within 4Å: Chain B: G.315, R.316, T.317, T.326, S.327, P.328 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.315 Water bridges: B:T.317, B:T.317 EDO.12: 5 residues within 4Å: Chain A: S.166 Chain B: K.159, L.163, L.331, T.334 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.159, B:K.159, B:T.334 Water bridges: B:T.334, A:S.166, A:S.166, A:S.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2010-10-13

Peptides

Alanine dehydrogenase/pyridine nucleotide transhydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alanine dehydrogenase/pyridine nucleotide transhydrogenase