SMTL ID : 3p43.1

Structure and Activities of Archaeal Members of the LigD 3' Phosphoesterase DNA Repair Enzyme Superfamily

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.37, H.43, D.45 Ligands: PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.37, A:H.43, A:D.45, A:D.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: P.60, R.71, L.72 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: H.37, H.43, D.45, A.58, T.76, Y.95, G.96 Ligands: MN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.45 Water bridges: A:R.47, A:R.47 Salt bridges: A:H.37, A:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, P. et al., Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily. Nucleic Acids Res. (2011)

Release Date

2011-01-19

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein