- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)
- 5 x DSF: (2S)-2-(difluoromethoxy)-1,1,1,2-tetrafluoroethane(Non-covalent)
DSF.3: 9 residues within 4Å:- Chain A: Y.119, P.120, Y.197, I.201, I.202, V.242, Y.254, T.255, I.258
No protein-ligand interaction detected (PLIP)DSF.7: 12 residues within 4Å:- Chain B: Y.119, P.120, Y.197, I.201, I.202, M.205, V.242, Y.254, T.255, I.258, I.259
- Ligands: PLC.8
No protein-ligand interaction detected (PLIP)DSF.12: 8 residues within 4Å:- Chain C: Y.119, P.120, Y.197, I.201, I.202, V.242, T.255, I.258
No protein-ligand interaction detected (PLIP)DSF.15: 12 residues within 4Å:- Chain D: Y.119, P.120, F.121, Y.197, I.201, I.202, M.205, V.242, Y.254, T.255, I.258, I.259
No protein-ligand interaction detected (PLIP)DSF.19: 11 residues within 4Å:- Chain E: P.120, F.121, Y.197, I.201, I.202, M.205, V.242, Y.254, T.255, I.258, I.259
No protein-ligand interaction detected (PLIP)- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
PLC.4: 8 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.202, L.206, Y.254, N.307, F.315
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.121, A:F.121, A:Y.194, A:I.202, A:L.206, A:Y.254
- Hydrogen bonds: A:F.121, A:Y.254
PLC.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PLC.8: 10 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.202, L.206, Y.254, N.307, F.315
- Ligands: DSF.7, PLC.9
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:F.121, B:Y.194, B:I.202, B:L.206, B:Y.254
- Hydrogen bonds: B:F.121, B:Y.254
PLC.9: 1 residues within 4Å:- Ligands: PLC.8
No protein-ligand interaction detected (PLIP)PLC.13: 8 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.202, L.206, Y.254, N.307, F.315
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:F.121, C:Y.194, C:I.202, C:L.206, C:Y.254
- Hydrogen bonds: C:F.121, C:Y.254
PLC.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PLC.16: 9 residues within 4Å:- Chain D: R.118, F.121, Y.194, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.17
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:F.121, D:Y.194, D:I.202, D:L.206, D:Y.254
- Hydrogen bonds: D:F.121, D:Y.254
PLC.17: 1 residues within 4Å:- Ligands: PLC.16
No protein-ligand interaction detected (PLIP)PLC.20: 8 residues within 4Å:- Chain E: R.118, F.121, Y.194, I.202, L.206, Y.254, N.307, F.315
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:F.121, E:F.121, E:F.121, E:Y.194, E:I.202, E:L.206, E:Y.254
- Hydrogen bonds: E:F.121
PLC.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nury, H. et al., X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel. Nature (2011)
- Release Date
- 2011-01-19
- Peptides
- Glr4197 protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)
- 5 x DSF: (2S)-2-(difluoromethoxy)-1,1,1,2-tetrafluoroethane(Non-covalent)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nury, H. et al., X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel. Nature (2011)
- Release Date
- 2011-01-19
- Peptides
- Glr4197 protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.