SMTL ID : 3p5c.1

The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain B: A.176, A.178, P.179, V.181, T.183, C.206, D.208 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:A.178, B:V.181, B:T.183, B:C.206 CA.2: 6 residues within 4Å: Chain C: C.38, T.40, N.41, E.42, D.56, L.57 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.40, C:D.56 CA.3: 6 residues within 4Å: Chain C: K.19, N.22, A.24, D.26, D.32, E.33 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:K.19, C:D.26, C:D.32, C:E.33 CA.4: 6 residues within 4Å: Chain C: D.79, I.80, D.81, E.82, L.96, G.99 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.79, C:I.80, C:L.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lo Surdo, P. et al., Mechanistic implications for LDL receptor degradation from the PCSK9/LDLR structure at neutral pH. Embo Rep. (2011)

Release Date

2011-10-26

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B
Low density lipoprotein receptor variant: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
A

C
L

Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

Low density lipoprotein receptor variant

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