SMTL ID : 3p5g.2 (3 other biounits)

Structure of the carbohydrate-recognition domain of human Langerin with Blood group B trisaccharide (Gal alpha1-3(Fuc alpha1-2)Gal)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLA- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose

GLA-FUC-GLA.1: 10 residues within 4Å: Chain A: I.90, P.91, G.92, E.93, N.95, E.101, K.107, N.115, D.116 Ligands: CA.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.93, A:N.95, A:E.101, A:K.107, A:N.115, A:P.91, A:E.93, A:N.95 Water bridges: A:E.93, A:G.92

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.115, D.116 Ligands: GLA-FUC-GLA.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.116, A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site. J.Mol.Biol. (2011)

Release Date

2010-12-08

Peptides

C-type lectin domain family 4 member K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C-type lectin domain family 4 member K

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