SMTL ID : 3p5r.2 (1 other biounit)

Crystal Structure of Taxadiene Synthase from Pacific Yew (Taxus brevifolia) in complex with Mg2+ and 2-fluorogeranylgeranyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: R.648, N.651, T.655, E.659 Ligands: FGG.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.655, A:E.659, A:E.659, H2O.23 MG.2: 5 residues within 4Å: Chain A: D.507, D.511, E.585 Ligands: MG.3, FGG.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.507, A:D.511, H2O.7, H2O.17, H2O.17 MG.3: 4 residues within 4Å: Chain A: D.507, D.511 Ligands: MG.2, FGG.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.507, A:D.511, H2O.6, H2O.7

1 x FGG: (2Z,6E,10E)-2-fluoro-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl trihydrogen diphosphate(Non-covalent)

FGG.4: 18 residues within 4Å: Chain A: E.477, V.478, S.481, G.500, Q.503, V.504, D.507, D.511, V.608, W.647, R.648, N.651, T.655, E.659, F.728 Ligands: MG.1, MG.2, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.478, A:Q.503, A:V.504, A:W.647, A:F.728, A:F.728 Hydrogen bonds: A:D.507, A:N.651, A:T.655 Water bridges: A:R.648, A:R.648, A:D.652, A:R.662, A:R.662, A:R.662, A:Q.664 Salt bridges: A:R.648

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koksal, M. et al., Taxadiene synthase structure and evolution of modular architecture in terpene biosynthesis. Nature (2011)

Release Date

2010-12-29

Peptides

Taxadiene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Taxadiene synthase

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