SMTL ID : 3p75.1

Crystal structure of Staphylococcal nuclease variant Delta+PHS V104D at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.15, D.34, T.35 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.15, A:D.34, A:T.35, H2O.1, H2O.3 CA.3: 4 residues within 4Å: Chain A: D.13, D.15, T.16 Ligands: THP.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.13, A:D.15, A:T.16, H2O.2, H2O.2

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.2: 12 residues within 4Å: Chain A: D.15, T.16, R.29, L.30, L.31, D.71, K.72, Y.73, R.75, L.77, Y.101 Ligands: CA.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.29, A:L.77, A:Y.101, A:Y.101 Hydrogen bonds: A:T.16, A:D.71, A:R.75 Water bridges: A:D.13, A:D.13, A:R.29, A:R.29, A:Q.68, A:Y.101 Salt bridges: A:R.29, A:K.72, A:R.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khangulov, V.S. et al., Crystal structure of Staphylococcal nuclease variant Delta+PHS V104D at cryogenic temperature. TO BE PUBLISHED

Release Date

2010-11-17

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease