SMTL ID : 3p85.1

Crystal structure enoyl-coa hydratase from mycobacterium avium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain A: D.67, D.69 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.67, A:D.69, H2O.5, H2O.5, H2O.5 CA.4: 5 residues within 4Å: Ligands: EDO.6, CA.10, EDO.12, CA.16, EDO.18 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain B: D.67, D.69 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.67, B:D.69, H2O.13, H2O.13, H2O.13 CA.10: 5 residues within 4Å: Ligands: CA.4, EDO.6, EDO.12, CA.16, EDO.18 No protein-ligand interaction detected (PLIP) CA.13: 2 residues within 4Å: Chain C: D.67, D.69 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.67, C:D.69, H2O.21, H2O.21, H2O.21 CA.16: 5 residues within 4Å: Ligands: CA.4, EDO.6, CA.10, EDO.12, EDO.18 No protein-ligand interaction detected (PLIP) CA.19: 2 residues within 4Å: Chain D: D.67, D.69 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.67, D:D.69, H2O.29, H2O.29, H2O.29 CA.22: 5 residues within 4Å: Ligands: EDO.24, CA.28, EDO.30, CA.34, EDO.36 No protein-ligand interaction detected (PLIP) CA.25: 2 residues within 4Å: Chain E: D.67, D.69 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.67, E:D.69, H2O.37, H2O.37, H2O.37 CA.28: 5 residues within 4Å: Ligands: CA.22, EDO.24, EDO.30, CA.34, EDO.36 No protein-ligand interaction detected (PLIP) CA.31: 2 residues within 4Å: Chain F: D.67, D.69 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:D.67, F:D.69, H2O.45, H2O.45, H2O.45 CA.34: 5 residues within 4Å: Ligands: CA.22, EDO.24, CA.28, EDO.30, EDO.36 No protein-ligand interaction detected (PLIP)

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: A.182, R.186 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.183 Salt bridges: A:R.186 ACT.8: 2 residues within 4Å: Chain B: A.182, R.186 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.183 Salt bridges: B:R.186 ACT.14: 2 residues within 4Å: Chain C: A.182, R.186 2 PLIP interactions: 2 interactions with chain C Water bridges: C:D.183 Salt bridges: C:R.186 ACT.20: 2 residues within 4Å: Chain D: A.182, R.186 2 PLIP interactions: 2 interactions with chain D Water bridges: D:D.183 Salt bridges: D:R.186 ACT.26: 2 residues within 4Å: Chain E: A.182, R.186 2 PLIP interactions: 2 interactions with chain E Water bridges: E:D.183 Salt bridges: E:R.186 ACT.32: 2 residues within 4Å: Chain F: A.182, R.186 2 PLIP interactions: 2 interactions with chain F Water bridges: F:D.183 Salt bridges: F:R.186

6 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 10 residues within 4Å: Chain A: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.122, A:H.145, A:T.153, A:W.154 CAC.9: 10 residues within 4Å: Chain B: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.122, B:H.145, B:T.153, B:W.154 CAC.15: 10 residues within 4Å: Chain C: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.122, C:H.145, C:T.153, C:W.154 CAC.21: 10 residues within 4Å: Chain D: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.122, D:H.145, D:T.153, D:W.154 CAC.27: 10 residues within 4Å: Chain E: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:G.122, E:H.145, E:T.153, E:W.154 CAC.33: 10 residues within 4Å: Chain F: L.86, I.100, T.121, G.122, E.125, H.145, L.151, P.152, T.153, W.154 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:G.122, F:H.145, F:T.153, F:W.154

6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 10 residues within 4Å: Chain A: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 Chain C: L.185, T.191, E.192 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.171, A:T.175, C:T.191 1PE.11: 10 residues within 4Å: Chain A: L.185, T.191, E.192 Chain B: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.191, B:R.171, B:T.175 1PE.17: 10 residues within 4Å: Chain B: L.185, T.191, E.192 Chain C: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.171, C:T.175, B:T.191 1PE.23: 10 residues within 4Å: Chain D: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 Chain F: L.185, T.191, E.192 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:T.191, D:R.171 1PE.29: 10 residues within 4Å: Chain D: L.185, T.191, E.192 Chain E: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:T.191, E:R.171 1PE.35: 10 residues within 4Å: Chain E: L.185, T.191, E.192 Chain F: L.168, R.171, M.172, T.175, D.177, Y.178, D.183 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.171, E:T.191

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 9 residues within 4Å: Chain C: Q.162, K.163, A.187, G.188 Ligands: CA.4, CA.10, EDO.12, CA.16, EDO.18 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.162 EDO.12: 9 residues within 4Å: Chain A: Q.162, K.163, A.187, G.188 Ligands: CA.4, EDO.6, CA.10, CA.16, EDO.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.162 EDO.18: 9 residues within 4Å: Chain B: Q.162, K.163, A.187, G.188 Ligands: CA.4, EDO.6, CA.10, EDO.12, CA.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.162 EDO.24: 9 residues within 4Å: Chain F: Q.162, K.163, A.187, G.188 Ligands: CA.22, CA.28, EDO.30, CA.34, EDO.36 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Q.162 EDO.30: 9 residues within 4Å: Chain D: Q.162, K.163, A.187, G.188 Ligands: CA.22, EDO.24, CA.28, CA.34, EDO.36 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.162 EDO.36: 9 residues within 4Å: Chain E: Q.162, K.163, A.187, G.188 Ligands: CA.22, EDO.24, CA.28, EDO.30, CA.34 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2010-11-03

Peptides

Enoyl-CoA hydratase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Enoyl-CoA hydratase