SMTL ID : 3p8x.1

Synthesis, Structure, and Biological Activity of des-Side Chain Analogues of 1alpha,25-Dihydroxyvitamin D3 with Substituents at C-18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZYD: (1R,3S,5Z)-5-{(2E)-2-[(3aR,7aS)-7a-(7-hydroxy-7-methyloctyl)octahydro-4H-inden-4-ylidene]ethylidene}-4-methylidenecyclohexane-1,3-diol(Non-covalent)

ZYD.1: 21 residues within 4Å: Chain A: Y.47, Y.51, L.80, L.83, L.86, V.87, S.90, I.124, R.127, S.128, S.131, W.139, C.141, V.153, H.158, L.166, H.250, L.257, L.267, V.271, F.275 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.47, A:L.80, A:L.86, A:L.86, A:V.87, A:W.139, A:V.153, A:L.166, A:L.257, A:L.267, A:V.271, A:F.275 Hydrogen bonds: A:Y.47, A:S.90, A:R.127, A:R.127, A:H.158

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Q.260, P.261, E.262, C.263, S.264 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.260, A:E.262, A:C.263, A:S.264, A:S.264, A:S.264 SO4.3: 5 residues within 4Å: Chain A: F.132, T.133, M.134, D.135, K.174 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.133, A:M.134 Water bridges: A:K.174, A:K.174 Salt bridges: A:K.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verlinden, L. et al., Synthesis, Structure, and Biological Activity of des-Side Chain Analogues of 1 ,25-Dihydroxyvitamin D3 with Substituents at C-18. Chemmedchem (2011)

Release Date

2011-08-31

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor