SMTL ID : 3p9x.1

Crystal structure of phosphoribosylglycinamide formyltransferase from Bacillus Halodurans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.10, S.12, G.13, T.14, N.15, Q.172 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.12, A:G.13, A:T.14, A:N.15, A:N.15, A:Q.172 Water bridges: A:S.12, A:A.16, A:A.88 SO4.2: 3 residues within 4Å: Chain A: K.39, P.40, G.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.41 Salt bridges: A:K.39 SO4.3: 1 residues within 4Å: Chain A: R.105 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.105 SO4.4: 2 residues within 4Å: Chain A: A.173, R.177 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.177, A:R.177, A:R.177 Salt bridges: A:R.177 SO4.5: 3 residues within 4Å: Chain A: K.66, R.92, L.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.93 Salt bridges: A:K.66, A:R.92 SO4.7: 5 residues within 4Å: Chain B: S.10, S.12, G.13, T.14, N.15 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.12, B:G.13, B:T.14, B:N.15, B:N.15 Water bridges: B:S.12, B:G.13, B:A.16, B:Q.172 SO4.8: 1 residues within 4Å: Chain B: R.177 5 PLIP interactions: 5 interactions with chain B Water bridges: B:A.173, B:R.177, B:R.177, B:R.177 Salt bridges: B:R.177 SO4.9: 1 residues within 4Å: Chain B: N.130 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.130

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain A: V.156, S.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.157, A:S.157 GOL.10: 2 residues within 4Å: Chain B: V.156, S.157 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.157, B:S.157 Water bridges: B:S.157, B:E.159 GOL.11: 4 residues within 4Å: Chain B: M.91, P.111, L.120, H.121 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.121 Water bridges: B:H.121, B:A.122, B:I.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of phosphoribosylglycinamide formyltransferase from Bacillus Halodurans. To be Published

Release Date

2011-01-19

Peptides

phosphoribosylglycinamide formyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

phosphoribosylglycinamide formyltransferase