SMTL ID : 3pa2.2 (2 other biounits)

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type Ley

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC-FUC.1: 5 residues within 4Å: Chain A: A.135, N.136, R.137, H.139, D.166 No protein-ligand interaction detected (PLIP)

15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.60, T.62, G.63, A.66, L.91, K.174 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: G.16, P.26, I.27, D.28 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: Q.58, N.90, L.91, N.92, L.106 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: R.80, G.81, V.142, S.160, T.161, W.162 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: E.36, D.190, Q.191, W.192 Ligands: EDO.15 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: P.11, L.13, E.245, H.249 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: G.232, Y.233 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: P.26, D.28 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: R.122 Ligands: EDO.11 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: R.68 Ligands: EDO.10 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: I.39, Q.41, W.192 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: E.140, W.162, K.230 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: L.53, Q.58, L.59 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: F.189, Q.191, R.224, P.236, A.237 Ligands: EDO.6 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: P.24, P.61 Ligand excluded by PLIP

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.17: 5 residues within 4Å: Chain A: L.53, Q.54, G.55, T.57, L.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.55 Water bridges: A:L.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansman, G.S. et al., Crystal Structures of GII.10 and GII.12 Norovirus Protruding Domains in Complex with Histo-Blood Group Antigens Reveal Details for a Potential Site of Vulnerability. J.Virol. (2011)

Release Date

2011-05-11

Peptides

Capsid protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Capsid protein

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