SMTL ID : 3pdj.2 (1 other biounit)

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase 1 (11b-HSD1) in Complex with 4,4-Disubstituted Cyclohexylbenzamide Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x 3PJ: N-[trans-4-(3-amino-3-oxopropyl)-4-phenylcyclohexyl]-N-cyclopropyl-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide(Non-covalent)

3PJ.1: 20 residues within 4Å: Chain A: T.105, S.106, L.107, S.151, A.153, Y.158, M.160, Y.164, L.196, G.197, L.198, T.203, A.204, A.207, V.208, I.211, M.214 Chain B: Y.261, M.267 Ligands: NAP.2 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.105, A:L.107, A:Y.158, A:M.160, A:Y.164, A:L.198, A:V.208, A:I.211 Hydrogen bonds: A:S.151, A:Y.164, A:T.203, B:Y.261 3PJ.3: 19 residues within 4Å: Chain A: Y.261 Chain B: T.105, S.106, L.107, S.151, A.153, Y.158, V.161, Y.164, L.196, G.197, L.198, T.203, A.204, A.207, V.208, H.213, M.214 Ligands: NAP.4 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.105, B:L.107, B:Y.158, B:V.161, B:Y.164, B:A.204, B:V.208, B:H.213 Hydrogen bonds: B:S.151, B:Y.164, B:T.203, B:M.214, A:Y.261 Water bridges: A:S.264 3PJ.5: 20 residues within 4Å: Chain C: T.105, S.106, L.107, S.151, A.153, Y.158, M.160, Y.164, L.196, G.197, L.198, T.203, A.204, A.207, V.208, I.211, M.214 Chain D: Y.261, M.267 Ligands: NAP.6 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:T.105, C:L.107, C:Y.158, C:M.160, C:Y.164, C:L.198, C:V.208, C:I.211 Hydrogen bonds: C:S.151, C:T.203, D:Y.261 3PJ.7: 19 residues within 4Å: Chain C: Y.261 Chain D: T.105, S.106, L.107, S.151, A.153, Y.158, V.161, Y.164, L.196, G.197, L.198, T.203, A.204, A.207, V.208, H.213, M.214 Ligands: NAP.8 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:T.105, D:L.107, D:Y.158, D:V.161, D:Y.164, D:A.204, D:V.208, D:H.213 Hydrogen bonds: D:S.151, D:T.203, D:M.214, C:Y.261 Water bridges: C:S.264

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 29 residues within 4Å: Chain A: G.22, A.23, S.24, K.25, G.26, I.27, A.46, R.47, S.48, G.72, T.73, M.74, N.100, H.101, I.102, Y.128, V.149, S.150, S.151, Y.164, K.168, L.196, G.197, L.198, I.199, T.201, T.203, A.204 Ligands: 3PJ.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:L.196 Hydrogen bonds: A:S.24, A:S.24, A:K.25, A:K.25, A:I.27, A:R.47, A:S.48, A:T.73, A:T.73, A:M.74, A:E.75, A:N.100, A:N.100, A:I.102, A:Y.128, A:K.168, A:I.199, A:I.199, A:T.201, A:T.201, A:T.203, A:T.203 Water bridges: A:G.22, A:K.25, A:G.28, A:R.47, A:S.48, A:T.203 Salt bridges: A:K.25, A:R.47 NAP.4: 30 residues within 4Å: Chain B: G.22, A.23, S.24, K.25, G.26, I.27, A.46, R.47, S.48, G.72, T.73, M.74, N.100, H.101, I.102, N.104, Y.128, V.149, S.150, S.151, Y.164, K.168, L.196, G.197, L.198, I.199, T.201, T.203, A.204 Ligands: 3PJ.3 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:L.196 Hydrogen bonds: B:G.22, B:S.24, B:S.24, B:K.25, B:I.27, B:R.47, B:S.48, B:T.73, B:T.73, B:M.74, B:N.100, B:N.100, B:Y.128, B:K.168, B:I.199, B:I.199, B:T.201, B:T.203, B:T.203 Water bridges: B:G.26, B:G.26, B:G.28, B:R.47, B:R.47, B:S.48, B:S.48, B:T.103, B:N.104 Salt bridges: B:K.25, B:R.47 NAP.6: 29 residues within 4Å: Chain C: G.22, A.23, S.24, K.25, G.26, I.27, A.46, R.47, S.48, G.72, T.73, M.74, N.100, H.101, I.102, Y.128, V.149, S.150, S.151, Y.164, K.168, L.196, G.197, L.198, I.199, T.201, T.203, A.204 Ligands: 3PJ.5 30 PLIP interactions: 30 interactions with chain C Hydrophobic interactions: C:L.196 Hydrogen bonds: C:S.24, C:S.24, C:K.25, C:K.25, C:I.27, C:R.47, C:S.48, C:T.73, C:M.74, C:N.100, C:N.100, C:I.102, C:Y.164, C:K.168, C:I.199, C:I.199, C:T.201, C:T.203, C:T.203 Water bridges: C:G.22, C:K.25, C:G.28, C:R.47, C:S.48, C:T.103, C:T.103, C:T.203 Salt bridges: C:K.25, C:R.47 NAP.8: 30 residues within 4Å: Chain D: G.22, A.23, S.24, K.25, G.26, I.27, A.46, R.47, S.48, G.72, T.73, M.74, N.100, H.101, I.102, N.104, Y.128, V.149, S.150, S.151, Y.164, K.168, L.196, G.197, L.198, I.199, T.201, T.203, A.204 Ligands: 3PJ.7 30 PLIP interactions: 30 interactions with chain D Hydrophobic interactions: D:L.196 Hydrogen bonds: D:G.22, D:S.24, D:S.24, D:K.25, D:I.27, D:R.47, D:S.48, D:T.73, D:M.74, D:N.100, D:N.100, D:Y.164, D:K.168, D:I.199, D:I.199, D:T.201, D:T.201, D:T.203, D:T.203 Water bridges: D:G.26, D:G.26, D:G.28, D:R.47, D:R.47, D:S.48, D:S.48, D:N.104 Salt bridges: D:K.25, D:R.47

Links

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Citation

Sun, D. et al., Synthesis and Optimization of Novel 4,4-Disubstituted Cyclohexylbenzamide Derivatives as Potent 11beta-HSD1 Inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-10-05

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Corticosteroid 11-beta-dehydrogenase isozyme 1

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