SMTL ID : 3pds.1

Irreversible Agonist-Beta2 Adrenoceptor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

1 x ERC: 8-hydroxy-5-[(1R)-1-hydroxy-2-({2-[3-methoxy-4-(3-sulfanylpropoxy)phenyl]ethyl}amino)ethyl]quinolin-2(1H)-one(Non-covalent)

ERC.1: 21 residues within 4Å: Chain A: G.66, C.69, W.75, W.85, D.89, V.90, C.167, D.168, F.169, A.176, S.179, S.183, W.390, F.393, F.394, N.397, Y.412, I.413, N.416, W.417, Y.420 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.85, A:V.90, A:V.90, A:F.169, A:F.169, A:F.393, A:F.393 Hydrogen bonds: A:D.89, A:S.179, A:S.179, A:S.179, A:S.183, A:N.397, A:N.416 pi-Stacking: A:F.394

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: Q.41, Y.46, T.49, C.53, R.127, I.130, L.131, W.134 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.127, A:I.130, A:L.131, A:W.134, A:W.134 Hydrogen bonds: A:Q.41

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: T.42, V.43, T.44, R.107, Y.117, Q.118, S.119 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.42, A:V.43, A:T.44, A:Y.117, A:S.119 Salt bridges: A:R.107 SO4.4: 4 residues within 4Å: Chain A: F.368, K.374, K.377, R.432 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.368 Salt bridges: A:K.374, A:K.377, A:R.432 SO4.5: 2 residues within 4Å: Chain A: T.122, K.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.123 Salt bridges: A:K.123 SO4.6: 5 residues within 4Å: Chain A: F.319, T.320, N.321, S.322, N.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.318, A:N.321, A:N.321, A:S.322, A:N.337 SO4.7: 4 residues within 4Å: Chain A: T.347, P.348, N.349, R.350 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.349, A:N.349, A:R.350 SO4.8: 1 residues within 4Å: Chain A: R.324 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenbaum, D.M. et al., Structure and function of an irreversible agonist-beta(2) adrenoceptor complex. Nature (2011)

Release Date

2011-01-12

Peptides

Fusion protein Beta-2 adrenergic receptor/Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Fusion protein Beta-2 adrenergic receptor/Lysozyme