SMTL ID : 3pf7.1 (1 other biounit)

Crystal structure of BoxB with malonate bound to the diiron center

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: E.120, E.150, H.153, H.243 Ligands: FE.2, OH.3, MLA.4 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:E.120, A:E.150, A:H.153, OH.3, H2O.19 FE.2: 7 residues within 4Å: Chain A: E.150, D.211, E.240, H.243 Ligands: FE.1, OH.3, MLA.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.150, A:D.211, A:E.240, A:H.243, OH.3

1 x OH: HYDROXIDE ION(Non-covalent)

OH.3: 8 residues within 4Å: Chain A: E.120, E.150, H.153, E.240, H.243 Ligands: FE.1, FE.2, MLA.4 No protein-ligand interaction detected (PLIP)

1 x MLA: MALONIC ACID(Non-covalent)

MLA.4: 13 residues within 4Å: Chain A: Q.116, T.119, E.120, E.150, F.193, T.210, D.211, D.213, G.214, E.240 Ligands: FE.1, FE.2, OH.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.193 Hydrogen bonds: A:Q.116, A:D.213, A:E.240

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: R.106, S.107, R.110 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rather, L.J. et al., Structure and Mechanism of the Diiron Benzoyl-Coenzyme A Epoxidase BoxB. J.Biol.Chem. (2011)

Release Date

2011-06-01

Peptides

Benzoyl-CoA oxygenase component B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Benzoyl-CoA oxygenase component B

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