SMTL ID : 3pff.2 (1 other biounit)

Truncated human atp-citrate lyase with ADP and tartrate bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.257, S.260, G.261, A.262, S.263 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.257, A:D.257, A:S.260, A:A.262, H2O.11 MG.2: 4 residues within 4Å: Chain A: N.203, P.204, D.216 Ligands: ADP.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.203, A:D.216, H2O.12, H2O.13 MG.5: 5 residues within 4Å: Chain B: D.257, S.260, G.261, A.262, S.263 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.257, B:D.257, B:S.260, B:A.262, H2O.26 MG.6: 4 residues within 4Å: Chain B: N.203, P.204, D.216 Ligands: ADP.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:N.203, B:D.216, H2O.27, H2O.28

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.3: 8 residues within 4Å: Chain A: G.309, A.310, A.345, N.346, F.347, T.348, R.379, G.665 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.309, A:A.310, A:N.346, A:N.346, A:F.347, A:T.348, A:T.348 Water bridges: A:G.282, A:G.665 Salt bridges: A:R.379 TLA.7: 8 residues within 4Å: Chain B: G.309, A.310, A.345, N.346, F.347, T.348, R.379, G.665 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.309, B:A.310, B:N.346, B:N.346, B:F.347, B:T.348, B:T.348 Water bridges: B:G.282, B:G.665 Salt bridges: B:R.379

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 17 residues within 4Å: Chain A: V.56, K.58, R.65, R.66, G.67, P.109, F.110, V.111, H.113, E.118, G.139, V.140, N.203, P.204, L.215, D.216 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.66, A:G.67, A:P.109, A:V.111, A:E.118, A:V.140, A:D.216, A:D.216 Water bridges: A:K.58, A:R.65, A:R.65, A:R.65, A:K.68, A:G.139, A:P.204 Salt bridges: A:K.58, A:R.66, A:R.66 ADP.8: 17 residues within 4Å: Chain B: V.56, K.58, R.65, R.66, G.67, P.109, F.110, V.111, H.113, E.118, G.139, V.140, N.203, P.204, L.215, D.216 Ligands: MG.6 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:R.66, B:G.67, B:P.109, B:V.111, B:E.118, B:V.140, B:D.216 Water bridges: B:K.58, B:R.65, B:R.65, B:R.65, B:K.68, B:G.139, B:P.204 Salt bridges: B:K.58, B:R.66, B:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, T. et al., ADP-Mg2+ bound to the ATP-grasp domain of ATP-citrate lyase. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-10-12

Peptides

ATP-citrate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP-citrate synthase

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