SMTL ID : 3pfn.1

Crystal Structure of human NAD kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

62 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 5 residues within 4Å: Chain A: S.106, F.128, S.131 Chain B: G.9 Ligands: UNX.19 Ligand excluded by PLIP UNX.2: 4 residues within 4Å: Chain A: D.104, I.105, N.107, Q.108 Ligand excluded by PLIP UNX.3: 3 residues within 4Å: Chain A: D.118, F.145, L.146 Ligand excluded by PLIP UNX.4: 6 residues within 4Å: Chain A: D.118, G.119, L.121, L.122, L.146, N.218 Ligand excluded by PLIP UNX.5: 6 residues within 4Å: Chain A: S.125, S.126, Q.129, Q.215, V.216, D.317 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: R.171, S.172, T.254, P.255, T.256 Ligand excluded by PLIP UNX.7: 6 residues within 4Å: Chain A: E.219, S.253, G.257, A.260, Y.261, A.262 Ligand excluded by PLIP UNX.8: 6 residues within 4Å: Chain A: I.251, S.253, A.262, M.278, I.279, T.280 Ligand excluded by PLIP UNX.9: 5 residues within 4Å: Chain A: Q.246, P.284, H.285, S.286, F.289 Ligand excluded by PLIP UNX.10: 4 residues within 4Å: Chain A: R.171, P.255, T.256, T.259 Ligand excluded by PLIP UNX.11: 5 residues within 4Å: Chain A: V.43, V.72, E.73, V.76 Ligands: UNX.12 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: I.44, K.45, V.76 Ligands: UNX.11 Ligand excluded by PLIP UNX.13: 9 residues within 4Å: Chain A: F.8, G.9, P.10, K.11, A.12 Chain B: W.34, D.110, P.133, P.134 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: K.175, Q.215, S.335, C.336 Ligand excluded by PLIP UNX.15: 1 residues within 4Å: Chain A: E.78 Ligand excluded by PLIP UNX.16: 6 residues within 4Å: Chain A: S.172, R.173, T.334, S.335, C.336, P.338 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain A: D.104, I.105, S.106, L.127 Ligand excluded by PLIP UNX.18: 7 residues within 4Å: Chain A: G.266, A.267, S.268, P.291 Chain B: G.266, A.267, S.268 Ligand excluded by PLIP UNX.19: 6 residues within 4Å: Chain A: S.106, F.128, Q.129, G.130, S.131 Ligands: UNX.1 Ligand excluded by PLIP UNX.20: 5 residues within 4Å: Chain A: S.131, V.132, Y.337, P.338 Chain B: F.8 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain A: D.234, T.244, S.305 Ligand excluded by PLIP UNX.22: 5 residues within 4Å: Chain B: Q.246, P.284, H.285, S.286, F.289 Ligand excluded by PLIP UNX.23: 6 residues within 4Å: Chain A: P.10 Chain B: S.106, N.107, Q.108, I.109, P.133 Ligand excluded by PLIP UNX.24: 5 residues within 4Å: Chain B: D.118, G.119, L.121, L.122, L.146 Ligand excluded by PLIP UNX.25: 7 residues within 4Å: Chain B: S.125, S.126, Q.129, Q.215, V.216, D.317 Ligands: UNX.39 Ligand excluded by PLIP UNX.26: 5 residues within 4Å: Chain B: V.221, D.223, W.313, V.314, S.315 Ligand excluded by PLIP UNX.27: 5 residues within 4Å: Chain B: I.251, S.253, A.262, M.278, T.280 Ligand excluded by PLIP UNX.28: 6 residues within 4Å: Chain B: E.219, S.253, G.257, A.260, Y.261, A.262 Ligand excluded by PLIP UNX.29: 4 residues within 4Å: Chain B: L.122, N.218, E.219 Chain C: Y.229 Ligand excluded by PLIP UNX.30: 6 residues within 4Å: Chain B: Y.236, D.238, G.239, E.299, L.300, K.301 Ligand excluded by PLIP UNX.31: 6 residues within 4Å: Chain B: R.171, S.172, T.254, P.255, T.256 Ligands: UNX.32 Ligand excluded by PLIP UNX.32: 5 residues within 4Å: Chain B: R.171, S.172, P.255, P.272 Ligands: UNX.31 Ligand excluded by PLIP UNX.33: 5 residues within 4Å: Chain B: S.172, R.173, T.334, S.335, P.338 Ligand excluded by PLIP UNX.34: 2 residues within 4Å: Chain B: D.248 Chain C: D.248 Ligand excluded by PLIP UNX.35: 4 residues within 4Å: Chain B: D.103, D.104, I.105, L.127 Ligand excluded by PLIP UNX.36: 3 residues within 4Å: Chain B: A.265, C.283 Ligands: UNX.40 Ligand excluded by PLIP UNX.37: 6 residues within 4Å: Chain B: E.219, V.221, S.315, D.317, G.318 Chain C: Y.229 Ligand excluded by PLIP UNX.38: 6 residues within 4Å: Chain B: A.267, M.278, I.279, T.280, P.291, I.292 Ligand excluded by PLIP UNX.39: 2 residues within 4Å: Chain B: S.126 Ligands: UNX.25 Ligand excluded by PLIP UNX.40: 5 residues within 4Å: Chain B: A.265, T.280, P.281, P.291 Ligands: UNX.36 Ligand excluded by PLIP UNX.41: 1 residues within 4Å: Chain B: R.224 Ligand excluded by PLIP UNX.42: 4 residues within 4Å: Chain B: A.264 Chain C: C.283, P.284, L.287 Ligand excluded by PLIP UNX.43: 7 residues within 4Å: Chain C: S.125, S.126, Q.129, Q.215, V.216, D.317 Ligands: UNX.44 Ligand excluded by PLIP UNX.44: 5 residues within 4Å: Chain C: L.122, S.125, S.126, D.317 Ligands: UNX.43 Ligand excluded by PLIP UNX.45: 5 residues within 4Å: Chain C: K.175, Q.215, S.335, C.336, Y.337 Ligand excluded by PLIP UNX.46: 5 residues within 4Å: Chain C: Q.246, P.284, H.285, S.286, F.289 Ligand excluded by PLIP UNX.47: 5 residues within 4Å: Chain C: P.275, P.295, A.296 Chain D: N.273, P.275 Ligand excluded by PLIP UNX.48: 5 residues within 4Å: Chain C: R.171, S.172, P.255, P.272 Ligands: UNX.52 Ligand excluded by PLIP UNX.49: 5 residues within 4Å: Chain C: S.106, F.128, Q.129, G.130, S.131 Ligand excluded by PLIP UNX.50: 6 residues within 4Å: Chain C: S.172, R.173, T.334, S.335, Y.337, P.338 Ligand excluded by PLIP UNX.51: 6 residues within 4Å: Chain C: A.267, S.268, M.278, P.291, V.293 Chain D: S.268 Ligand excluded by PLIP UNX.52: 6 residues within 4Å: Chain C: R.171, S.172, T.254, P.255, T.256 Ligands: UNX.48 Ligand excluded by PLIP UNX.53: 7 residues within 4Å: Chain C: E.219, I.251, S.253, G.257, A.260, Y.261, A.262 Ligand excluded by PLIP UNX.54: 6 residues within 4Å: Chain C: I.251, S.253, A.262, M.278, I.279, T.280 Ligand excluded by PLIP UNX.55: 6 residues within 4Å: Chain C: D.118, G.119, T.120, L.121, L.122, L.146 Ligand excluded by PLIP UNX.56: 1 residues within 4Å: Chain D: G.225 Ligand excluded by PLIP UNX.57: 3 residues within 4Å: Chain D: A.265, P.281, C.283 Ligand excluded by PLIP UNX.58: 3 residues within 4Å: Chain D: S.172, P.255, P.272 Ligand excluded by PLIP UNX.59: 3 residues within 4Å: Chain D: K.175, S.331, T.333 Ligand excluded by PLIP UNX.60: 7 residues within 4Å: Chain D: L.122, S.125, S.126, Q.215, V.216, L.217, D.317 Ligand excluded by PLIP UNX.61: 6 residues within 4Å: Chain D: E.219, S.253, G.257, A.260, Y.261, A.262 Ligand excluded by PLIP UNX.62: 2 residues within 4Å: Chain D: F.145, L.146 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal Structure of human NAD kinase. to be published

Release Date

2010-11-10

Peptides

NAD kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NAD kinase