SMTL ID : 3pfy.1

The catalytic domain of human OTUD5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 3 residues within 4Å: Chain A: E.87, V.88, K.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.87 Water bridges: A:V.88 PEG.2: 5 residues within 4Å: Chain A: K.62, D.77, Q.78, G.81, V.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.62, A:D.77, A:G.81 Water bridges: A:R.140

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: T.41, Q.45, W.48 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: K.65, R.73, H.86 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.86 Water bridges: A:K.65, A:R.73, A:R.73 Salt bridges: A:K.65, A:R.73

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 4 residues within 4Å: Chain A: M.37, V.42, Q.45, R.172 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., The catalytic domain of human OTUD5. To be Published

Release Date

2010-12-15

Peptides

OTU domain-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OTU domain-containing protein 5