SMTL ID : 3pgu.1

Phe3Glu mutant of EcFadL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

14 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 6 residues within 4Å: Chain A: W.209, A.211, G.212, L.225, Y.227, W.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.225 C8E.2: 6 residues within 4Å: Chain A: A.96, S.97, I.98, N.129, L.130 Ligands: C8E.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.97 C8E.3: 5 residues within 4Å: Chain A: L.369, V.387, Y.389, W.411 Ligands: C8E.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.389 C8E.4: 4 residues within 4Å: Chain A: V.387, W.411, F.413 Ligands: C8E.3 No protein-ligand interaction detected (PLIP) C8E.5: 4 residues within 4Å: Chain A: A.175, T.178, Q.180, G.181 No protein-ligand interaction detected (PLIP) C8E.6: 9 residues within 4Å: Chain A: L.128, F.146, A.148, F.207, G.208, W.209, S.229, E.230 Ligands: C8E.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.128, A:F.146, A:F.146, A:A.148, A:F.207 Hydrogen bonds: A:S.229 C8E.7: 3 residues within 4Å: Chain A: Y.291, L.293, I.327 No protein-ligand interaction detected (PLIP) C8E.8: 2 residues within 4Å: Chain A: L.162 Ligands: C8E.12 No protein-ligand interaction detected (PLIP) C8E.12: 5 residues within 4Å: Chain A: L.162, L.165, V.166, P.401 Ligands: C8E.8 No protein-ligand interaction detected (PLIP) C8E.16: 8 residues within 4Å: Chain A: W.287, T.331, T.332, Y.333, F.341, R.342, T.343 Ligands: 2PE.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.287, A:T.331, A:Y.333, A:T.343 C8E.17: 5 residues within 4Å: Chain A: L.130, G.132, F.142, G.143, L.144 No protein-ligand interaction detected (PLIP) C8E.19: 7 residues within 4Å: Chain A: D.25, R.282, Q.286, Y.334, Y.335, D.336, D.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.25, A:R.282 C8E.20: 9 residues within 4Å: Chain A: P.63, Q.164, A.167, G.168, Q.169, M.171, Q.172, Q.182, N.189 No protein-ligand interaction detected (PLIP) C8E.22: 3 residues within 4Å: Chain A: F.45, F.417, Y.419 No protein-ligand interaction detected (PLIP)

3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.9: 2 residues within 4Å: Chain A: Y.223 Ligands: 2PE.11 No protein-ligand interaction detected (PLIP) 2PE.10: 12 residues within 4Å: Chain A: Y.51, W.78, F.341, A.371, G.372, T.373, V.385, V.387, F.413, G.414, T.415 Ligands: C8E.16 No protein-ligand interaction detected (PLIP) 2PE.11: 6 residues within 4Å: Chain A: L.136, N.137, W.140, I.213, Y.215 Ligands: 2PE.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.140, A:Y.215

2 x NI: NICKEL (II) ION(Non-covalent)

NI.13: 2 residues within 4Å: Chain A: H.423, H.425 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.423, A:H.425, H2O.9, H2O.9 NI.14: 2 residues within 4Å: Chain A: D.349, D.365 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.349, A:D.365, A:D.365, H2O.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.15: 4 residues within 4Å: Chain A: D.53, P.54, D.55, N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.54 NA.18: 3 residues within 4Å: Chain A: G.60, S.67, K.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.60

1 x OLA: OLEIC ACID(Non-covalent)

OLA.21: 13 residues within 4Å: Chain A: Q.4, L.5, N.6, E.7, V.56, P.362, Q.364, R.366, W.368, M.390, G.392, G.408, K.409 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.56, A:P.362 Hydrogen bonds: A:N.6, A:N.6, A:E.7 Water bridges: A:R.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lepore, B.W. et al., From the Cover: Ligand-gated diffusion across the bacterial outer membrane. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-05-25

Peptides

Long-chain fatty acid transport protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Long-chain fatty acid transport protein