SMTL ID : 3pgx.1

Crystal structure of a putative carveol dehydrogenase from Mycobacterium paratuberculosis bound to nicotinamide adenine dinucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 31 residues within 4Å: Chain A: G.22, A.24, R.25, G.26, Q.27, D.46, I.47, V.51, Y.57, A.60, L.84, D.85, V.86, R.87, N.112, A.113, G.114, V.115, V.135, V.163, S.164, S.165, Y.178, K.182, P.208, S.210, V.211, T.213, P.214, M.215, I.216 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.208 Hydrogen bonds: A:R.25, A:Q.27, A:Q.27, A:I.47, A:D.85, A:D.85, A:V.86, A:N.112, A:G.114, A:Y.178, A:K.182, A:S.210, A:V.211, A:V.211 Water bridges: A:G.28, A:A.60, A:A.60, A:N.112 Salt bridges: A:R.25 NAD.2: 30 residues within 4Å: Chain B: G.22, A.24, R.25, G.26, Q.27, D.46, I.47, V.51, Y.57, A.60, L.84, D.85, V.86, N.112, A.113, G.114, V.115, V.135, V.163, S.164, S.165, Y.178, K.182, P.208, S.210, V.211, T.213, P.214, M.215, I.216 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:P.208 Hydrogen bonds: B:R.25, B:Q.27, B:Q.27, B:I.47, B:D.85, B:V.86, B:N.112, B:G.114, B:K.182, B:S.210, B:V.211, B:V.211, B:T.213, B:T.213 Water bridges: B:G.28, B:A.60, B:N.112, B:Y.178 Salt bridges: B:R.25 NAD.3: 30 residues within 4Å: Chain C: G.22, A.24, R.25, G.26, Q.27, D.46, I.47, V.51, Y.57, A.60, L.84, D.85, V.86, N.112, A.113, G.114, V.115, V.135, V.163, S.164, S.165, Y.178, K.182, P.208, S.210, V.211, T.213, P.214, M.215, I.216 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.208 Hydrogen bonds: C:G.22, C:Q.27, C:Q.27, C:I.47, C:D.85, C:D.85, C:V.86, C:N.112, C:G.114, C:Y.178, C:K.182, C:S.210, C:V.211, C:V.211 Water bridges: C:G.28, C:A.60, C:N.112 Salt bridges: C:R.25 NAD.4: 30 residues within 4Å: Chain D: G.22, A.24, R.25, G.26, Q.27, D.46, I.47, V.51, Y.57, A.60, L.84, D.85, V.86, N.112, A.113, G.114, V.115, V.135, V.163, S.164, S.165, Y.178, K.182, P.208, S.210, V.211, T.213, P.214, M.215, I.216 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:P.208 Hydrogen bonds: D:Q.27, D:Q.27, D:I.47, D:D.85, D:V.86, D:N.112, D:G.114, D:K.182, D:V.211, D:V.211, D:T.213 Water bridges: D:G.28, D:A.60, D:N.112, D:S.210 Salt bridges: D:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haft, D.H. et al., Mycofactocin-associated mycobacterial dehydrogenases with non-exchangeable NAD cofactors. Sci Rep (2017)

Release Date

2010-11-24

Peptides

carveol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

carveol dehydrogenase