SMTL ID : 3phx.2 (1 other biounit)

OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with ISG15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-oligomer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.45, A.48, K.55, T.56, D.57, S.59, Y.60 No protein-ligand interaction detected (PLIP) ZN.2: 2 residues within 4Å: Chain A: S.8, D.10 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, H2O.3, H2O.3 ZN.3: 1 residues within 4Å: Chain A: D.10 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, H2O.3, H2O.3 ZN.4: 2 residues within 4Å: Chain A: N.26, E.128 No protein-ligand interaction detected (PLIP) ZN.5: 3 residues within 4Å: Chain A: Q.36, H.153, D.155 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.153, A:D.155, A:D.155, H2O.3, H2O.3 ZN.6: 2 residues within 4Å: Chain A: D.90 Chain B: E.50 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.90, B:E.50, H2O.2, H2O.5, H2O.6 ZN.7: 1 residues within 4Å: Chain A: E.49 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.49 ZN.8: 4 residues within 4Å: Chain A: P.37, D.39, H.45 Ligands: ACY.10 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.39, A:D.39, A:H.45, H2O.3 ZN.9: 2 residues within 4Å: Chain A: G.1, D.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.1, A:D.4, A:D.4, H2O.3 ZN.12: 1 residues within 4Å: Chain B: H.29 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.29 ZN.13: 2 residues within 4Å: Chain B: H.29, Q.32 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.29 ZN.14: 2 residues within 4Å: Chain B: D.42 Ligands: ACY.15 3 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: B:D.42, H2O.7, ACY.15

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.10: 7 residues within 4Å: Chain A: D.39, N.41, H.45, H.58, Y.60, D.98 Ligands: ZN.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.41 Salt bridges: A:H.45, A:H.58 ACY.15: 2 residues within 4Å: Chain B: D.42 Ligands: ZN.14 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.42

1 x NEH: ETHANAMINE(Covalent)

NEH.11: 1 residues within 4Å: Chain B: G.79 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akutsu, M. et al., Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-02-02

Peptides

RNA-directed RNA polymerase L: A
Ubiquitin-like protein ISG15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-directed RNA polymerase L

Ubiquitin-like protein ISG15

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